Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00255 ATGCCGTTTGGTTCAACCCCTTATCACCTTCTGCCGTTTGACTCGGTTCCTCACAGTTTTTCAGCGTTCGGTGCTAACTGCTCCATCTTGGTCATACCTCGCTTGGTCTTTCCCATAGCTTTCCACCGCTCGCCTGTGTTCGGCCTCCACCTGTTAGTGACTGTTCGGTATTCAATTGAGTTTGGCCAATGTTCAACTCCGTTCAGTCCTTCATGCCTCTGCTCAGATGCCAAGTTCAATTCTACCACCACTTCACCTTCCAACTGCTCGGTCTCGTTCATGCCTTCTACCGTTCGGTCGAGGATTTGCGTGAAGAATCTTCCCAAACATGTTGCGGAGGATGAACTAAGGGAATTCTTTTCTGAGAAAGGAATAATCACTGACGTCAAGCTCATGCGTACCAAAGACGGTAAGAGTAGGCAATTTGCGTTTATAGGGTATCGAACAGAAAATGAAGCTCATGAAGCCATTCGATATTTCAATAATTCTTTCCTTCGCACATCTAAAATTTCATGTGAGGTAGCTCGAAAACTTGGGGATGAAAATCTTCCTCGTCCATGGAGTCGCCATTCGAAGAAGAAAGACGACAAAGGGACTGTGCTGGATGTGGGGAAACCTGCTAGAGCTAAGGGCAGGAAAGAAAATTTGAAGAATGGTGTGGATGTTGATGACCCGCAGCTTCAAGATTTTCTTCAGGTCATGCAGCCTCGGGTTAACTCTAAGATGTGGGCAAATGATACCTCCGGTTTGACCAGTGTTGAAAACAACCGAGGACTCTCAAATAAGGATAATGAAGGCGCATCAGTTTCAACTGATGACAGTGGCTCATTGGAAGATGGATTTCTGGATATTTCCGAACCCAGCGGCAAGTCACTTGAGCCTGAACGTGACGAGGTCATTTCAGATATGGATTATTTCAAGAGTAAGGTGACGAAAGAGTGGTCTGATTCTGAAAGTAGTGATGAAGATGATGACGACAATGATGATAATGATGCCTCATCTGATGACAATGATGACAAAGATGATAATAGTGATGTAAATGAAGATGGAAAAATAAGTCATCCAAGAAATGATGCTCGAGAGGTAGACGTAGAGGGCAAAGAAGATACTAGTAGAGAGAAGGTTACCCATGAAAAATCTCAAGTAAATGTGACTGAGCATGGGGGCCAATTATCAAAAACAGAAGACGTGAAAGGAGTTTTTGAGTCCTGTCGGTTGTTTGTCCGTAATCTGCCATACACGACCACTGAGGAGGAACTGGAAGAACATTTCAATCACATTGGTAGTATCTCACAGGTTCATCTAGTTGTTGATAAAGATACAAAACGATCCAAAGGAATAGCATATATTCTTTATACAGCTCCAGAATTTGCAGACAGGGCTTTGAAAGAGTTAGACAATTCGATCTTTCAAGGAAGATTGTTGCATGTTATGCCAGCCTTACAAAGACATTCAGAGAATCAAGAGAACAATGTTTTGAAGGACCAAAGCTCCAAAACCCTCAAAAAACAGAGAGAGGAAAAAAGGAAAGCAAATGAAGCTAGTGGAGATACTAGAGCGTGGAATAGTCTGTTCATGCGCCCTGATACAATTGTGGAAAACATTGCACGGAAATATGGTGTAGATAAAAGTGATTTACTTGATGGAGAAGCTGACGATCTTGCTGTACGTATTGCTCTGGGAGAGACTCAAGTGATTTCAGAAACAAAAAATGCATTTAAAAATGCTGGTGTAAATGTTGAGGCCTTGGAGAAACTTGCTAATAACAAAATAGATGGCTTAAAAAGAAGTAATCATGTGCTTTTGGTGAAGAACTTGCCTTATGGTTCCACAGAAAATGAACTTGCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCACTGGTTGTTTTCCTCGAACCAGCGGAAGCTCGAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTATAAGGATGCTCCACTATACTTGGAGTGGGCTCCTTCCAATATTCTTAGCCAAAGTTCAACATCAAAAAATGATGACATGAATGGTGCAATTGGTGAAAATGATGCCAAGAGGCAGATATTGGAGCAAAACGTGGAAAGAATAACAGATGTTGATATTGATCCAGACAGAGTAGAGGCTCGGTCCTTATTTGTCAAGAACATAAATTTCAAGACAACAGATGAAAATCTGAGGAAACATTTTAGTGAACTCATGAAAGAGGGAAGAATTTTGAGTGTGAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTCATTGAGTTTGACTCCCCTGAAACTGCTACAAATATTTGCAGAGATTTGCAGGGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTCATGTCAAGAATGATGCGCAGAAACAAAAGACAATTGAGAAGGATAAGAGTTCAACAAAATTGCTCGTAAGAAATGTTGCTTTTGAGGCAACAGAGAAGGATCTAAGACGATTGTTTAGCCCCTTTGGCCAGATTAAAAGCTTAAGGTTGCCAATGAAGTTTGGAAGCCATAGAGGCTTTGCTTTTGTAGAGTATGTTACTCAGCAGGAAGCACAAAATGCGCTCAAAGCACTTTCAAGCACCCATCTCTATGGGAGACATCTGGTAATAGAGAGAGCGAAAGAAGGTGAGAGTTTGGAAGAACTGCGAGCACGAACAGCTTCTCAATTTAGTGACGACCACAAAGGATTTCAAGGTGCTATTAAATTATCCAAGAAAAGAAAGGACGTGGACATCTTAGATGAAGGGAAGACGAAGTTTGGAAGATTTGATGACTAG 2838 0.4144 MPFGSTPYHLLPFDSVPHSFSAFGANCSILVIPRLVFPIAFHRSPVFGLHLLVTVRYSIEFGQCSTPFSPSCLCSDAKFNSTTTSPSNCSVSFMPSTVRSRICVKNLPKHVAEDELREFFSEKGIITDVKLMRTKDGKSRQFAFIGYRTENEAHEAIRYFNNSFLRTSKISCEVARKLGDENLPRPWSRHSKKKDDKGTVLDVGKPARAKGRKENLKNGVDVDDPQLQDFLQVMQPRVNSKMWANDTSGLTSVENNRGLSNKDNEGASVSTDDSGSLEDGFLDISEPSGKSLEPERDEVISDMDYFKSKVTKEWSDSESSDEDDDDNDDNDASSDDNDDKDDNSDVNEDGKISHPRNDAREVDVEGKEDTSREKVTHEKSQVNVTEHGGQLSKTEDVKGVFESCRLFVRNLPYTTTEEELEEHFNHIGSISQVHLVVDKDTKRSKGIAYILYTAPEFADRALKELDNSIFQGRLLHVMPALQRHSENQENNVLKDQSSKTLKKQREEKRKANEASGDTRAWNSLFMRPDTIVENIARKYGVDKSDLLDGEADDLAVRIALGETQVISETKNAFKNAGVNVEALEKLANNKIDGLKRSNHVLLVKNLPYGSTENELAKMFGKFGSLDKIILPPTKTLALVVFLEPAEARAAFRGLAYKRYKDAPLYLEWAPSNILSQSSTSKNDDMNGAIGENDAKRQILEQNVERITDVDIDPDRVEARSLFVKNINFKTTDENLRKHFSELMKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSPETATNICRDLQGTVLDSHALILQPCHVKNDAQKQKTIEKDKSSTKLLVRNVAFEATEKDLRRLFSPFGQIKSLRLPMKFGSHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLVIERAKEGESLEELRARTASQFSDDHKGFQGAIKLSKKRKDVDILDEGKTKFGRFDD 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00255 945 MobiDBLite consensus disorder prediction 496 515 - -
Vian7g00255 945 FunFam RNA-binding motif protein 19 96 198 - -
Vian7g00255 945 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 601 662 IPR000504 GO:0003723
Vian7g00255 945 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 406 476 IPR000504 GO:0003723
Vian7g00255 945 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 821 888 IPR000504 GO:0003723
Vian7g00255 945 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 721 795 IPR000504 GO:0003723
Vian7g00255 945 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Vian7g00255 945 MobiDBLite consensus disorder prediction 485 515 - -
Vian7g00255 945 CDD RRM4_RBM19_RRM3_MRD1 599 670 - -
Vian7g00255 945 FunFam Multiple RNA-binding domain-containing protein 1 590 692 - -
Vian7g00255 945 SUPERFAMILY RNA-binding domain, RBD 815 898 IPR035979 GO:0003676
Vian7g00255 945 SUPERFAMILY RNA-binding domain, RBD 596 687 IPR035979 GO:0003676
Vian7g00255 945 MobiDBLite consensus disorder prediction 317 343 - -
Vian7g00255 945 Gene3D - 88 219 IPR012677 -
Vian7g00255 945 MobiDBLite consensus disorder prediction 181 220 - -
Vian7g00255 945 MobiDBLite consensus disorder prediction 289 316 - -
Vian7g00255 945 Gene3D - 715 815 IPR012677 -
Vian7g00255 945 SUPERFAMILY RNA-binding domain, RBD 100 181 IPR035979 GO:0003676
Vian7g00255 945 Gene3D - 816 917 IPR012677 -
Vian7g00255 945 Gene3D - 582 694 IPR012677 -
Vian7g00255 945 PANTHER RNA-BINDING MOTIF PROTEIN 14B 806 899 - -
Vian7g00255 945 CDD RRM6_RBM19_RRM5_MRD1 819 893 - -
Vian7g00255 945 FunFam - 374 521 - -
Vian7g00255 945 SMART rrm1_1 101 173 IPR000504 GO:0003723
Vian7g00255 945 SMART rrm1_1 600 667 IPR000504 GO:0003723
Vian7g00255 945 SMART rrm1_1 820 891 IPR000504 GO:0003723
Vian7g00255 945 SMART rrm1_1 405 478 IPR000504 GO:0003723
Vian7g00255 945 SMART rrm1_1 720 798 IPR000504 GO:0003723
Vian7g00255 945 Gene3D - 307 494 IPR012677 -
Vian7g00255 945 SMART rrm2_1 405 478 IPR003954 GO:0003676
Vian7g00255 945 SMART rrm2_1 720 800 IPR003954 GO:0003676
Vian7g00255 945 SMART rrm2_1 820 891 IPR003954 GO:0003676
Vian7g00255 945 SMART rrm2_1 101 173 IPR003954 GO:0003676
Vian7g00255 945 Coils Coil 494 514 - -
Vian7g00255 945 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Vian7g00255 945 FunFam Multiple RNA-binding domain-containing protein 1 813 919 - -
Vian7g00255 945 MobiDBLite consensus disorder prediction 248 392 - -
Vian7g00255 945 SUPERFAMILY RNA-binding domain, RBD 402 486 IPR035979 GO:0003676
Vian7g00255 945 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 404 482 IPR000504 GO:0003723
Vian7g00255 945 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 599 671 IPR000504 GO:0003723
Vian7g00255 945 CDD RRM5_RBM19_like 720 798 IPR034423 -
Vian7g00255 945 FunFam Nucleotide/nucleic acid binding protein 715 810 - -
Vian7g00255 945 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 819 895 IPR000504 GO:0003723
Vian7g00255 945 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 719 802 IPR000504 GO:0003723
Vian7g00255 945 SUPERFAMILY RNA-binding domain, RBD 708 807 IPR035979 GO:0003676
Vian7g00255 945 CDD RRM1_MRD1 100 175 - -
Vian7g00255 945 MobiDBLite consensus disorder prediction 344 381 - -
Vian7g00255 945 MobiDBLite consensus disorder prediction 248 275 - -
Vian7g00255 945 MobiDBLite consensus disorder prediction 181 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00255 Vian-Chr7 7595713 7609048 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00255 712 911 Eukaryotic Initiation Factors Gene Family AT1G49760 29.108 4.45e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00255 K14787 - gmx:100798742 1350.11