Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00253 ATGGATCTCAGCTACGTTGAGACCTTTCCCTGGGATGCTTCATCTTGCAGAGACCCTGTTGTTGATAAGGAGCACTGTTGTCAAGCTTTGCTCAGTGTAATTGGCATGGGGTTGGCCGAACACCTCAAAAACACTTCCTACTTTCAACTTCCTGATGAAAACACTTCCTCCATCTGCTTGTCAGATTTTCAGACCAAAGTCTCAGCCTTGTCAATTAACTCCTCTTTGGTCCCTTATTGTTTTCCTAGAGCTTCTGACTTTGTTACCAACGCTTCCACTTGTGCAGGAATCATAACTGTAGATGATTGGAAGAGTAAAGTGGGTATGATTAGCCCCTTGGACACTTCTTGCAATGGGGACATGAGTGATCAAACCCGTTGCAGCCTTTGTACTGATGCTGGTCTCAAAGTGACTTCCCACCTCAATAGTTTAGACCCAAATGGCACAAAGTGCTTTTACTTCACAGTTTTGTATGCCTCGGCTATTGTTAATCAATACGGTCCTACAAATTTGGGCACCGCTGGTTGCATACTGGGCTTGCCGCTGTCTGTGAAAGGTTCATCGAATAGAAAACAAGAGCTGAAACTTGTTTTTGGGTTGGTGGGTGCTGTTACTGGTGTTGTGCTTGGTTTTGTGTTGATTTTGGTGTACAGAAAGTGGGATAAGAGAAGGAAGGAAGATAAGTATCACAGGTCGGTTGAAAACGGTGTGAGGAACAGTGTTTTGCCTAATACTGGTGCGAAATGGTTTCGCATATCGGAGCTTGAGCGAGCCACTGGTAAATTTTCTCAGAGGAATATGGTTGGCCAAGGTGGTGATGGGGTTGTGTACAAAGGGACTCTTTCAGATGGCACTGTGGTTGCGGTAAAGGAAATTTTTGATTTGGAGACAAAAGGGGATGAAGATTTCTGCTACGAAGTGGAGATCATAAGCAAAATAAAGCACAGGAATCTTCTTCCTCTTCGGGGCTGTTGCATTTCAAGTGATAATTTGAAAGGCAAGAGAAGGTTTCTGGTTTATGATTTCATGCCAAATGGCAGCCTCAGTTACCAGTTATCAGTTTCTGGTGCTAATAGGCTAACATGGCCACAAAGGAAGAACATAATCCTTGATGTGGCTAAGGGGCTTGCTTATTTGCATTATGAGATCAAACCCCCAATTTATCACCGTGACATAAAGGCTACCAACATACTTTTGGATTCAAAAATGAAAGCAAAAGTGTCAGATTTTGGGTTGGCGAAGCAAGGGAATGATGGCCAGTCTCATCTCACAACAAGAGTTGCTGGCACATATGGTTATTTGGCACCAGAGTATGCTCTTTATGGGCAACTGACAGAGAAGAGTGATGTGTACAGTTTTGGCATTGTGATTCTTGAGATCATGAGTGGAAGAAAAGTGCTTGATACCATGAATTCATCGGTTGTTTTGATCACGGATTGGGCATGGACACTGGCAAAATCAGGGAACGTGGAAGACATTTTTGACCAGTCAATAAAGGAAGAGGGACCAGAGAAGATCATGGAAAGGTTTGTTCTTGTGGGAATACTCTGTGCTCATGCGATGGTGGCTTTAAGACCTACCATTGCTGAGGCCCTTAAGATGTTAGAGGGTGACATTGACATACCCCAGTTACCTGACAGACCAGTGCCACTGGGTCAGGAGGCCTTCCATTCTTCTTTGCAGCATGGTTTGCAAACTAGCGTAGGATCATCCTCCTATTTTTCTTCATATCTTGCATCCTATTCATCAAGCACTAGAACAACATAG 1767 0.438 MDLSYVETFPWDASSCRDPVVDKEHCCQALLSVIGMGLAEHLKNTSYFQLPDENTSSICLSDFQTKVSALSINSSLVPYCFPRASDFVTNASTCAGIITVDDWKSKVGMISPLDTSCNGDMSDQTRCSLCTDAGLKVTSHLNSLDPNGTKCFYFTVLYASAIVNQYGPTNLGTAGCILGLPLSVKGSSNRKQELKLVFGLVGAVTGVVLGFVLILVYRKWDKRRKEDKYHRSVENGVRNSVLPNTGAKWFRISELERATGKFSQRNMVGQGGDGVVYKGTLSDGTVVAVKEIFDLETKGDEDFCYEVEIISKIKHRNLLPLRGCCISSDNLKGKRRFLVYDFMPNGSLSYQLSVSGANRLTWPQRKNIILDVAKGLAYLHYEIKPPIYHRDIKATNILLDSKMKAKVSDFGLAKQGNDGQSHLTTRVAGTYGYLAPEYALYGQLTEKSDVYSFGIVILEIMSGRKVLDTMNSSVVLITDWAWTLAKSGNVEDIFDQSIKEEGPEKIMERFVLVGILCAHAMVALRPTIAEALKMLEGDIDIPQLPDRPVPLGQEAFHSSLQHGLQTSVGSSSYFSSYLASYSSSTRTT 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00253 588 SMART serkin_6 262 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00253 588 Pfam SPARK 1 151 IPR043891 -
Vian7g00253 588 FunFam Receptor-like serine/threonine-protein kinase At4g25390 227 342 - -
Vian7g00253 588 Gene3D Transferase(Phosphotransferase) domain 1 343 541 - -
Vian7g00253 588 Pfam Protein kinase domain 264 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00253 588 Gene3D Phosphorylase Kinase; domain 1 223 342 - -
Vian7g00253 588 ProSitePatterns Serine/Threonine protein kinases active-site signature. 387 399 IPR008271 GO:0004672|GO:0006468
Vian7g00253 588 SUPERFAMILY Protein kinase-like (PK-like) 247 551 IPR011009 -
Vian7g00253 588 ProSiteProfiles Protein kinase domain profile. 262 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00253 588 PANTHER OS01G0750732 PROTEIN 14 556 - -
Vian7g00253 588 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 343 543 - -
Vian7g00253 588 CDD STKc_IRAK 268 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00253 Vian-Chr7 7568040 7569806 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00253 1 556 Receptor kinase-like Gene Family AT1G11050 52.696 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vian7g00253 Pkinase 4.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00253 - - gmx:100820563 978.393