Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00247 ATGAAAAATCGTTTTTCTCCGACTACTTGCGCACACCAAATGTTGACGAAAAATCGTCGCTCGTCGTTTTCCTCCTCAACGGCGTCGTCTTTGGCCAAACGACATTCATCCGTCGTGTCGTCGGGGAAAGCTGCGAAGAGAGCGCCGCTCGCCAACATCACAAACGAGAGGAATGCGCCTTCCTCATCTTCGGTGTCAAGTTCAATTAAAACTGCCAAGACCAAGAAAGAGGATCCCGCAAGAAGCAGTGGCATCACAAGATCAACAACTTGTGGGAACAAATTACGTGAGTTAAAGACTAACTCAGGCACAACTATCATTCCAAAGGCTAATTCCTTACCACAAACGAAGGATGCTGCTCCTGCAGTTGCCAGAGTCTCTGTGTCCGTTCAGAGCAGCATTGGTGTTTCTCCTAGTAAATCAGATGCGAGGTCCGTTTCTATGGATGAAACGTTGTCTTCTTATTCTATCAAGAGTCCTGATGAAGTTGAATATCTGGACAACAGGGATGTCTCAGCTGTTGGTTCAATTCAGAGAAAGACAAGCAATTTAAGCATTTGTGATACCACTAAGCCAGAAGGTAACATATATGGTGGGGAAATAGTTGTTGATTTAAAAAGAGAGGGCAAGGTTGTCAATATTGATAACATTTGCTCGGATCCGCAGCTTTGTGCAACCTATGCTTGTGATATCTACAAGCACCTACGTGAATCTGAGGAAAAGAAAAGGCCTTCCATAGACTTCATGGAGAGAATTCAGAATGACATAAATGTTAGCATGCGTGCAATATTGATTGACTGGCTTGTTGAGGTGGCTGAGGAGTATCGCCTTGTGCCTGATACATTGTATTTGACAGTGAACTATATTGATCGGTATCTTTCAGGGAATGCCATGAATAGGCAAAGATTACAATTACTCGGTGTTTCCTGCATGATGATTGCCTCTAAATACGAGGAGATTTGTGCACCAGAGGTGGAGGATTTTTGTTATATAACTGATAATACGTACTTAAAAGAAGAGCTTTTACGAATGGAATCTGCTGTTTTGAATTATCTTAAGTTCGAAATGACAGCCCCAACAGTTAAATGTTTCTTAAGACGATTTGTTCGTGCAGCTGCTCATGATGTCCAAGAGCTACCTTCACTTCAACTGGAGTGCCTAACCAACTTTATTGCCGAATTGTCTCTCTTGGAGTACAATATGCTGCGTTATCCTCCATCACTGATAGCTGCTTCGGCAACTTTCCTTGGCAGATTTATACTTTTCCCTTCAAAGAAACCATGGAATTCCATATTGCAACATTACACACAATACTGGCCTTCTGATTTGTGTGCTTGTGTGAAAGATCTCCATCGCCTTTGTTGCAGTAGCGTTACTTCTAATTTACCTGCCATCCGAGAGAAATACAGTCAGCACAAGTACAAATATGTGGCCAAGAAATGCATCCCTGTTTCAATACCGCAAGAAGTTTTCCAGAATTGA 1482 0.4244 MKNRFSPTTCAHQMLTKNRRSSFSSSTASSLAKRHSSVVSSGKAAKRAPLANITNERNAPSSSSVSSSIKTAKTKKEDPARSSGITRSTTCGNKLRELKTNSGTTIIPKANSLPQTKDAAPAVARVSVSVQSSIGVSPSKSDARSVSMDETLSSYSIKSPDEVEYLDNRDVSAVGSIQRKTSNLSICDTTKPEGNIYGGEIVVDLKREGKVVNIDNICSDPQLCATYACDIYKHLRESEEKKRPSIDFMERIQNDINVSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNAMNRQRLQLLGVSCMMIASKYEEICAPEVEDFCYITDNTYLKEELLRMESAVLNYLKFEMTAPTVKCFLRRFVRAAAHDVQELPSLQLECLTNFIAELSLLEYNMLRYPPSLIAASATFLGRFILFPSKKPWNSILQHYTQYWPSDLCACVKDLHRLCCSSVTSNLPAIREKYSQHKYKYVAKKCIPVSIPQEVFQN 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00247 493 Gene3D - 230 479 - -
Vian7g00247 493 Gene3D - 244 357 - -
Vian7g00247 493 MobiDBLite consensus disorder prediction 1 37 - -
Vian7g00247 493 SMART Cyclin_C_2 359 483 IPR004367 -
Vian7g00247 493 SUPERFAMILY Cyclin-like 359 482 IPR036915 -
Vian7g00247 493 SMART cyclin_7 363 452 IPR013763 -
Vian7g00247 493 SMART cyclin_7 266 350 IPR013763 -
Vian7g00247 493 CDD CYCLIN_AtCycA_like_rpt1 220 355 - -
Vian7g00247 493 FunFam Mitotic cyclin 6 244 344 - -
Vian7g00247 493 MobiDBLite consensus disorder prediction 54 70 - -
Vian7g00247 493 MobiDBLite consensus disorder prediction 83 100 - -
Vian7g00247 493 PIRSF Cyclin_A_B_D_E 8 486 IPR046965 GO:0016538|GO:0044772
Vian7g00247 493 PANTHER CYCLINS 149 471 IPR039361 -
Vian7g00247 493 MobiDBLite consensus disorder prediction 1 100 - -
Vian7g00247 493 FunFam Cyclin A1 346 479 - -
Vian7g00247 493 Pfam Cyclin, N-terminal domain 230 356 IPR006671 -
Vian7g00247 493 ProSitePatterns Cyclins signature. 261 292 IPR006671 -
Vian7g00247 493 CDD CYCLIN_AtCycA-like_rpt2 359 474 - -
Vian7g00247 493 Pfam Cyclin, C-terminal domain 359 480 IPR004367 -
Vian7g00247 493 SUPERFAMILY Cyclin-like 219 356 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00247 Vian-Chr7 7486170 7489651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00247 15 493 Core Cell Cycle Gene Families AT1G44110 57.809 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00247 K06627 - gmx:100776207 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00247 7 7486170 7489651 Vian7g00247 7 7486170 7489651 ECH
Vian7g00247 7 7486170 7489651 Vian2g01814 2 36529033 36531350 PCT