Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00240 ATGGATCAACGTGAAGAAGGCAAACAACAACCATCCCAGAAAACAGCATCAGAAAATCAGCTTGACCCAGTTGATAGTTCTGAGAATATTGCTCCAGAAAATGGTTTTCAGGAGCAAAGTGGCACATTCACAACGTTTGCATCATTAGAAAGTGGAACTGAGAGTGAGTCCTCTTTCGATGACCATGATGAAGATTCTGACTTTTTTCTGAGCCAGGAGTTTGAATCTGAACTTCAGTTTCTCGAGAGCGAAGGGAGCAATGATGATGATGATGATGATGATGAGGAAATGGAGGAAGATGAGATCGATGTGGATGAGTTGACCTATGAGGAGTTGATTGAGTTGGGAGATTTTATAGGGCGAGAGAAGAGAGGGTTATCAGCAAGTGAAATTTGTTCATGCTTGCATTCTCACACTTTTCATTCTGCAGAAAGCAAAAGTGGAGTTGATCTTTGTGTGATTTGCCAGGTTGAATATAAAGAAGGTGAAGCCCTAGTAGCAATTCAGTGTGAGCACCCTTATCATACAGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGCCCTATATGTAACACTGAAATTTCTGCTCCCAAGGTAGTTAATTAA 612 0.4069 MDQREEGKQQPSQKTASENQLDPVDSSENIAPENGFQEQSGTFTTFASLESGTESESSFDDHDEDSDFFLSQEFESELQFLESEGSNDDDDDDDEEMEEDEIDVDELTYEELIELGDFIGREKRGLSASEICSCLHSHTFHSAESKSGVDLCVICQVEYKEGEALVAIQCEHPYHTDCISKWLQIKKVCPICNTEISAPKVVN 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00240 203 ProSiteProfiles Zinc finger RING-type profile. 152 193 IPR001841 -
Vian7g00240 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 200 IPR013083 -
Vian7g00240 203 MobiDBLite consensus disorder prediction 80 103 - -
Vian7g00240 203 MobiDBLite consensus disorder prediction 1 68 - -
Vian7g00240 203 Pfam RING-H2 zinc finger domain 150 193 IPR024766 GO:0008270
Vian7g00240 203 MobiDBLite consensus disorder prediction 82 103 - -
Vian7g00240 203 SUPERFAMILY RING/U-box 113 199 - -
Vian7g00240 203 FunFam E3 ubiquitin ligase BIG BROTHER-related 118 199 - -
Vian7g00240 203 SMART ring_2 152 192 IPR001841 -
Vian7g00240 203 MobiDBLite consensus disorder prediction 12 54 - -
Vian7g00240 203 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 21 197 IPR033276 GO:0004842|GO:0016567|GO:0046621
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00240 Vian-Chr7 7371462 7372073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00240 86 196 C3H Transcription Factor Family AT3G63530 47.368 5.96e-29 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00240 K19045 - gmx:100780686 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00240 7 7371462 7372073 Vian7g00240 7 7371462 7372073 ECH
Vian4g01538 4 30589719 30590661 Vian7g00240 7 7371462 7372073 PCT