Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00238 ATGGGAATGGATGATCCAGAATCTACAATGGCAACAGTTGCTAATTTTGTGGAGCAACTGCATGCCAATTTGTCATCACCGGTTGAGAAAGAAACCGTTACAGGGCGCTTACTAGGTATTGCCAGGAGAAGAAAGGATGCTAGAACACTCATAGGTTCTCATGCCCAAGCCATGCCATTGTTCATAAACATTCTCAGAAATGGAACACCTCTTGCAAAAGTTAATGTTGCTTCCACTCTGAGTGTCCTGTGCAAAGATGAAGAACTGAGGTTAAAAGTACTACTTGGTGGTTGTATCCCACCATTATTGTCACTTTTAAACTATGAATCCACGGAGACCAGGAAGGCTGCCGCTGAAGCATTATATGAAGTTTCCTCAGGTGGTCTGTCTGATGATCATGTTGGTATGAAAATTTTTGTCACAGAGGGTGTAGTTCCAACCTTATGGAGTCAACTAAATCCAAAGAAGAAGGAAGACAAAATTGTGGAGGGTTTTATTACTGGAGCATTAAGAAATCTTTGTGGTGACAAAGATGGCTACTGGAAAGCAACATTAGAAGCTGGAGGCGTGGATATCATACTTGTTGGTCCAAAAAATGACATTTCTGTTAGGGCTAGTGCTGCTGATGCCCTAGAAGCTCTCTCTTCAAAATCTACTATGGCTAAAAAGGTCATTGTTAATGCAGATGGAATTCCAATCCTTATTGGAGCAATAGTTGCTCCTTCTAATGAGTGTATGCAAGGTGATGGTGGCCAGGCTCTACAAGAGCACGCAACTCGAGCTTTAGCCAATATCTGCGGTGGCATGTCTGCATTAATACTATATCTTGGAGAACTTTCACGTTCTCCTAGCCTTGATGCTCCAGTTGGTGATATAATTGGGGCTCTTGCTTATACACTCATGGTCTTTGAGGAAAAAGTAGGTGTTGATGAGAAACATTTTGATGCAACTCAGATAGAGGATATTCTAGTAACTCTTCTAAAGCCTCGGGACAGCAAACTGATTCAAGAGTGTGTCCTTGAGGCTATGGCTAGCCTTTATGGAAACATCTGTCTCTCAAAGTGGCTCATTCAAGCTGATTCAAAGAAGGTTCTTATTGGACTTATAACCATGGCTGCCACTGACGTGCAAGAGTATCTGATACTTTCGTTGACAACCTTGTGTAGTGATAAGATTGGAGTATGGGAGGCCATAAAAAAGAGAGAAGGTATCCAATTACTAATATCATTGCTTGGATTATCCAGTGAGCAGCATCAAGAGTACTCAGTTCAGCTGCTAGCGATCTTAACTGAACAGGTTGATGACAGCAAGTGGGCAATTACTGCTGCTGGAGGGATTCCTCCACTGGTGCAGTTGTTGGAGACAGGATCACAGAAAGCAAGAGAGGATGCAGCAAATGTTCTGTGGAGTTTGTGCTGTCACAGTGAAGATATTCGCGCTTGTGTTGAAAGTGCTGGAGCCATACCAGCATTTTTATGGCTTCTTAAGAGTGGTGGACCAAAAGGGCAGGAAGCTTCTGCTATGGCACTAACAAAGCTTGTTCGAGTAGCTGATTCTGCCACAATTAATCAGCTATTAGCATTGCTCCTGCGGGATTCTCCAAGCTCGAAAGCCCACATAATCCGAGTTTTAGGTCATGTTCTTACTATGGCTTCACAGAATGATCTCCTTGAAAAAGGTTCTGCAGCTAACAAGGGCTTGAGATCTCTAGTTCAGGTCCTCAATTCATCCAATGAGGAAACCCAAGAATATGCAGCTTCGGTTCTAGCTGATTTGTTTATCACAAGACAAGACATATGTGATAGTCTTGCAACTGATGAGATTGTGCTTCCTTGCATGAAGCTTTTGACTAGTAAAACTCAAGTTGTTGCCACTCAATCAGCTCGAGCACTAAGTGCTCTGTCTCGTCCAACAAAGAACAAGGCTGCAAATAAAATGTCTTATATTGTAGAGGGTGATGTTGAGCCACTAATCAAGTTAGCTAAAACATCCTCTGTTGATGCTGCTGAAACTGCTGTTGCTGCATTGGCCAATCTTCTCTTTGATCCTTTTATTGCTGCTGAGGCTCTAGCTGAAGATGTTGTTTCAGCTTTAACTAGAGTTCTGGCAGAAGGGTCCTTGGAAGGTAAGCAAAATGCATCTCGTGCACTTCATCAATTATTGAAGCATTTTCCTGTAGGTGATGTTCTTAAGGGGAGTGCTCAATCTCGTTTCACTGTGCTTGCACTTGTTGATTTGTTAAAAGCTATGGATATGGACGAAACTGATGCTGCTGATGCTTTAGAAGTAATCGCATTGCTAGCCAGGACCAAGAAAGGTGTCAGGAACAATTACTCTGCATGGTCAGCTCTGGCTGAAATACCGTCAAGCTTAGAACTTCTTGTCTGCTGCCTGGCTGAGGGGCCCTCCCTTGTGCAGGACAAGGCAATTAAAATTCTATCTAGACTTTGTGGGGATCAGCCTGCTGTTCTTGGTGATTTGTTATCTACTAGTTCCAGATCCATTGGTTCATTGGCTAATAGAATAATGAACTCCTCCAGTCTAGAAGTAAAAATTGGAGGGTCTGCCTTGCTAATTTGTGCTGCTAAGCAGAAGAAAGAGCTTTCAATGGATTCACTTGACGTTTCTGGGCATCTGAAACCATTAATATATTCTTTAGTTGAAATGATAAAGCAAAGTTTTAAGTATTCTTCTTTAGAAATTGAAGTTCTCGCTTCTAAAGGTTTTATGGAGAGAAATGGTTTTCAAGAAGTTGATGAGTTTGATATTCCTGATCCTGCCACTGCCTTGGGAAGCACTATTGCGATGTGGTTGCTTTCAGTTATTGCTTCTTTCCATATAAAGAGCAAGCCCACAATTATGGAAGCTGGTGGACTTGAAGTTCTCTCCGACAAACTTGGAAGATATACTTCAAATCCACAGGCAGAATATGAGGATACAGAAGGAATATGGATCAATGCCTTGCTGTTGGCCATTTTATTTCAGGATACGAATGTTGTTCAGTCTCCTGTGACAATGCGCATTATACCTTCTATCACTCTTCTGCTAAGATCTGATGAAGTAATTGATAAATATTTTGCTGCCCAGGCTATGGCCAGTCTTGTTTGTAATGGCAATAAGGGAATAGATCTTGCCATTGCAAATTCTGGTGCTGTTGCTGGATTGATAACTATAATTGGGCATGTAGAGTCAGATATGCCTAATCTCATGGATTTATCAGAAGAATTTTCATTGGTACAAAACCCTGATCAAGTTGTTTTGGATCACCTTTTTGAAATTGAAGATGTAAAGGTGGGTTCTACGGCCAGGAAATCTATACCGCTCTTAGTGGATCTCCTGAGACCAATACCAGAAAGGCCTACTGCTCCACCAGTTGCTGTTAGACTCTTGATATCCATTGCAGATGGAAGTGATAGCAATAAATTAATCCTTGCTGAAGCTGGAGCTCTTGAAGCTTTGAACAAATACCTTTCCTTGAGTCCTCAAGACTCAACTGAGGCTGCTATATCTGAGTTATTGAGAATATTATTTTGCAATTCTGATCTCATTAAACACGAAGCAGCAATCAGTTCATTGAACCAACTTATAGCTGTTTTGCGTCTTGGATCAAGAACTGCTAGATACAGTGCAGCAAGAGCACTTCACGAACTTTTTGATGCTGACAACATTAGAGACTCAGAATTAGCTAAACAAGCTATTCAACCATTGGTTGATATGCTTAACACGACGTCAGGGCATGAACAGGAGGCTGCTCTCATGTCCTTGATCAAGTTAACTTCAGGAAATTCTTCAAAAGTATCTCTTCTTACTGATATGGAAGGAAACCCACTTAAATGTCTATACAAAATACTGTCTTCTGCTTCATCCTTGGAACTGAAGAGCCATGCTGCCCAACTCTGCTTTGCCCTTTTTGCCAATAGCAAGATCAGAGCAGATCCAGTTGCCTCAGAATGCATAGAACCCCTTATATTACTGTTGCAGTCTGGTTCTGAGACAGCAATAGAGTCTGGGGTTTGTGCTTTTGAGAGATTGTTGGAAGATGAACAACAGGTAGAGCTTGCAGCAGCCTACAATATTGTGGATCTCCTTGTGAGCTTGGTTTCCGGTACTAACTTTCAGCTTATTGAGGCTACCGTATCTGCTCTTATCAAATTGGGCAAAGATAGGACTACAAGTAAACTGGACATGGTGAAAGCTGGCATTATTGATAATTGTCTCAAGCTACTACAATTAGCACCTAGCTCTTTATGTTCCACAATATCTGAGCTCTTTCGCATTTTAACTAATAGTAGCGCAATTGCAAGAAGTTCAGATGCTGCAGAAATTGTAGAACCTCTTTTCCATGTTTTGCTCCGTCGAGATTTCAACTTATGGGGACAGCATAGTGCATTACAAGCACTTGTAAATATATTGGAGAAACCACAAAGTCTTGCCACCTTGAAGCTTACTCCAAGCCAAGTTATTGAACCCTTGATTTCTTTTCTGGAATCCCCATCCCAAGCTATTCAGCAGCTTGGCACAGAACTGTTATCTCATCTTCTTGCACAGGAACATTTTCAGCAAGATATTACAACTAAGAATGCAGTTGTGCCCCTCGTACAGCTTGCAGGAATTGGAATATTAAACTTACAGCAAACAGCTATAAAAGCATTGGAAAAAATTTCCACTAGTTGGCCTAAGGCTGTTGCTGATGCAGGAGGTATTTTTGAGCTTGCAAAGGTTATTATTCAAGAAGACCCTCAGCCACCGCATGCACTCTGGGAATCAGCTGCTCTAGTTCTCTCTAATGTATTACATTCCAATGCCGATTACTACTTTAAAGTTCCTGTGGTAGTTCTTGTAAAACTTTTGCACTCAACACTTGAGAATACAATTAGCATAGCCCTTAATGCTTTAATAGTTCATGACAGAAGTGATGCTTCAAGTGCTGAGCAGATGATGGAAGCTGGAGTTATAGAGGCTCTGTTAGACCTGTTAAGATCTCATCATTGTGAAGAAGCATCTGGCAATTTATTAGAAGCTTTATTTAACAATGTGAGAGTACGAGAGATGAAGGTGTCTAAATATGCTATAGCGCCTTTGTCCCAGTATCTCTTGGATCCACAAACCAGATCACAGTCTGGTAAGCTTCTTGCTGCTTTAGCTCTGGGAGATCTTTCCCAGCATGAAGGACATGCTAGATCTAGTGCCTCTGTTTCTGCATGTCGGGCATTGATAAGTTTACTTGAAGATCAGCCAACTGAAGAAATGAAGGTGGTAGCTATATGTGCATTGCAAAACTTTGTCATGAACAGCAGGACAAATAGACGAGCTGTTGCAGAAGCTGGAGGCATACTGGTGATTCAAGAATTGCTGCTGTCTCCAAACACAGAAGTTGCTGCACAAGCTGCTTTACTGATCAAATTTTTGTTTTCTACACATACACTGCAAGAATATGTATCAAATGAGTTGATCAGGTCTTTGACAGCTGCACTGGAAAGAGAGTTATGGTCAACTGCCACAATCAATGAAGCGGTTCTGAAAACTTTGCATGTGATATTCATGAACTTCCCTAAGCTCCACACATCTGAAGCAGCAACTCTTTGCATTCCTCATTTGGTAGGTGCACTTAAATCTGGTGGTGAAGCGGCTCAGGACTCTGTACTTGACACGTTTTGCTTGCTAAGACAATCATGGTCAACTATGCCAATAGATATAGCAAAGTCCCAAGCTATGATTGCTGCTGAAGCCATCCCCATTTTGCAAATGCTCATGAAAACCTGCCCACCTAGTTTCCATGAGAGGGCAGATACTCTTCTGCACTGCTTACCAGGGTGTTTGACTGTCACCATTAAGCGTGGAAACAACCTCAGGCAAACTATGGGAAGCACTAACGCATTCTGCCGGTTAACAATAGGAAATGGTCCTCCAAAACAAACCAAGGTAGTGAATCATAGTACTTCTCCCGAATGGAAAGAAGGATTCACTTGGGCATTTGATGTACCTCCAAAGGGCCAAAAGCTACATATCATATGCAAAAGCAAGAATACTTTTGGGAAGACAACTCTTGGAAGAGTCACCATTCAAATTGATAAAGTTGTATCAGAGGGGGTTTATAGTGGATTATTCAGTCTTAATCATGATGGTAACAAAGATGGTTCTTCCCGAACACTTGAAATTGAGATTATATGGTCCAACAGGATCTCCAATGATGACACTTGA 6201 0.4159 MGMDDPESTMATVANFVEQLHANLSSPVEKETVTGRLLGIARRRKDARTLIGSHAQAMPLFINILRNGTPLAKVNVASTLSVLCKDEELRLKVLLGGCIPPLLSLLNYESTETRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWSQLNPKKKEDKIVEGFITGALRNLCGDKDGYWKATLEAGGVDIILVGPKNDISVRASAADALEALSSKSTMAKKVIVNADGIPILIGAIVAPSNECMQGDGGQALQEHATRALANICGGMSALILYLGELSRSPSLDAPVGDIIGALAYTLMVFEEKVGVDEKHFDATQIEDILVTLLKPRDSKLIQECVLEAMASLYGNICLSKWLIQADSKKVLIGLITMAATDVQEYLILSLTTLCSDKIGVWEAIKKREGIQLLISLLGLSSEQHQEYSVQLLAILTEQVDDSKWAITAAGGIPPLVQLLETGSQKAREDAANVLWSLCCHSEDIRACVESAGAIPAFLWLLKSGGPKGQEASAMALTKLVRVADSATINQLLALLLRDSPSSKAHIIRVLGHVLTMASQNDLLEKGSAANKGLRSLVQVLNSSNEETQEYAASVLADLFITRQDICDSLATDEIVLPCMKLLTSKTQVVATQSARALSALSRPTKNKAANKMSYIVEGDVEPLIKLAKTSSVDAAETAVAALANLLFDPFIAAEALAEDVVSALTRVLAEGSLEGKQNASRALHQLLKHFPVGDVLKGSAQSRFTVLALVDLLKAMDMDETDAADALEVIALLARTKKGVRNNYSAWSALAEIPSSLELLVCCLAEGPSLVQDKAIKILSRLCGDQPAVLGDLLSTSSRSIGSLANRIMNSSSLEVKIGGSALLICAAKQKKELSMDSLDVSGHLKPLIYSLVEMIKQSFKYSSLEIEVLASKGFMERNGFQEVDEFDIPDPATALGSTIAMWLLSVIASFHIKSKPTIMEAGGLEVLSDKLGRYTSNPQAEYEDTEGIWINALLLAILFQDTNVVQSPVTMRIIPSITLLLRSDEVIDKYFAAQAMASLVCNGNKGIDLAIANSGAVAGLITIIGHVESDMPNLMDLSEEFSLVQNPDQVVLDHLFEIEDVKVGSTARKSIPLLVDLLRPIPERPTAPPVAVRLLISIADGSDSNKLILAEAGALEALNKYLSLSPQDSTEAAISELLRILFCNSDLIKHEAAISSLNQLIAVLRLGSRTARYSAARALHELFDADNIRDSELAKQAIQPLVDMLNTTSGHEQEAALMSLIKLTSGNSSKVSLLTDMEGNPLKCLYKILSSASSLELKSHAAQLCFALFANSKIRADPVASECIEPLILLLQSGSETAIESGVCAFERLLEDEQQVELAAAYNIVDLLVSLVSGTNFQLIEATVSALIKLGKDRTTSKLDMVKAGIIDNCLKLLQLAPSSLCSTISELFRILTNSSAIARSSDAAEIVEPLFHVLLRRDFNLWGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAIKALEKISTSWPKAVADAGGIFELAKVIIQEDPQPPHALWESAALVLSNVLHSNADYYFKVPVVVLVKLLHSTLENTISIALNALIVHDRSDASSAEQMMEAGVIEALLDLLRSHHCEEASGNLLEALFNNVRVREMKVSKYAIAPLSQYLLDPQTRSQSGKLLAALALGDLSQHEGHARSSASVSACRALISLLEDQPTEEMKVVAICALQNFVMNSRTNRRAVAEAGGILVIQELLLSPNTEVAAQAALLIKFLFSTHTLQEYVSNELIRSLTAALERELWSTATINEAVLKTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGGEAAQDSVLDTFCLLRQSWSTMPIDIAKSQAMIAAEAIPILQMLMKTCPPSFHERADTLLHCLPGCLTVTIKRGNNLRQTMGSTNAFCRLTIGNGPPKQTKVVNHSTSPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKTTLGRVTIQIDKVVSEGVYSGLFSLNHDGNKDGSSRTLEIEIIWSNRISNDDT 2066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00238 2066 Gene3D - 560 642 IPR011989 -
Vian7g00238 2066 Gene3D - 1277 1455 IPR011989 -
Vian7g00238 2066 Gene3D - 298 559 IPR011989 -
Vian7g00238 2066 Pfam Armadillo/beta-catenin-like repeat 437 472 IPR000225 GO:0005515
Vian7g00238 2066 CDD C2 1940 2030 - -
Vian7g00238 2066 SMART C2_3c 1939 2035 IPR000008 -
Vian7g00238 2066 SUPERFAMILY ARM repeat 784 1061 IPR016024 -
Vian7g00238 2066 Gene3D - 1729 1936 IPR011989 -
Vian7g00238 2066 SUPERFAMILY ARM repeat 1542 1936 IPR016024 -
Vian7g00238 2066 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 444 486 IPR000225 GO:0005515
Vian7g00238 2066 SUPERFAMILY ARM repeat 57 769 IPR016024 -
Vian7g00238 2066 ProSiteProfiles C2 domain profile. 1919 2036 IPR000008 -
Vian7g00238 2066 Gene3D - 5 297 IPR011989 -
Vian7g00238 2066 Gene3D C2 domain 1938 2064 IPR035892 -
Vian7g00238 2066 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1937 2043 IPR035892 -
Vian7g00238 2066 Gene3D - 1459 1728 IPR011989 -
Vian7g00238 2066 Gene3D - 1096 1276 IPR011989 -
Vian7g00238 2066 Pfam C2 domain 1939 2038 IPR000008 -
Vian7g00238 2066 Gene3D - 929 1085 IPR011989 -
Vian7g00238 2066 SMART arm_5 641 681 IPR000225 GO:0005515
Vian7g00238 2066 SMART arm_5 218 267 IPR000225 GO:0005515
Vian7g00238 2066 SMART arm_5 1474 1515 IPR000225 GO:0005515
Vian7g00238 2066 SMART arm_5 1765 1805 IPR000225 GO:0005515
Vian7g00238 2066 SMART arm_5 596 636 IPR000225 GO:0005515
Vian7g00238 2066 SMART arm_5 475 515 IPR000225 GO:0005515
Vian7g00238 2066 SMART arm_5 1137 1177 IPR000225 GO:0005515
Vian7g00238 2066 SMART arm_5 1306 1346 IPR000225 GO:0005515
Vian7g00238 2066 SMART arm_5 1347 1387 IPR000225 GO:0005515
Vian7g00238 2066 SMART arm_5 131 175 IPR000225 GO:0005515
Vian7g00238 2066 SMART arm_5 554 594 IPR000225 GO:0005515
Vian7g00238 2066 SMART arm_5 390 431 IPR000225 GO:0005515
Vian7g00238 2066 SMART arm_5 682 722 IPR000225 GO:0005515
Vian7g00238 2066 SMART arm_5 433 473 IPR000225 GO:0005515
Vian7g00238 2066 SMART arm_5 1639 1680 IPR000225 GO:0005515
Vian7g00238 2066 SMART arm_5 86 126 IPR000225 GO:0005515
Vian7g00238 2066 SUPERFAMILY ARM repeat 1104 1430 IPR016024 -
Vian7g00238 2066 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 194 2060 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Vian7g00238 2066 Gene3D - 643 894 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00238 Vian-Chr7 7323133 7331716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00238 363 645 U-box Gene Family AT2G23140 26.962 4.87e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00238 - - gmx:100796864 3648.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00238 7 7323133 7331716 Vian7g00238 7 7323133 7331716 ECH