Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00208 ATGGACGACCCTGATTTCCTCGACTTATCCAAACCCAGCATCACCACCAGCTCTTCCTCCGAGGAAGACTGGATCAACCTTTGGTCCCCTCTCGTCGACTGGGGATCCCTCGCCGCCGGCGAAGACAATTTTCAAACCCTCATTGACTCCATCGCCCATGAAGACGACGTCGTTTCGACCCCTGATCAAACCATAGCCCAAGACTCCGACTTAAGTAGCCACGACGAGAAGGGCCTCCGCCTGGTGCACCTCCTCATGGCGGCGGCGGAGGCCCTCACCCCCGGCACCGAGAGCCACCACCTGGCTCGAGTGATATTGGTTCGGCTCAACGAGTTGGTGTCCACCACTCACGGCACCAACATCGAAAGACTCGCGGCGCACTTTAGCAGCGCGCTGCAAAATCTGCTAGATGGCGCCGGGAGTGCGCACAGCATAACCACCGACACCCCCAATCCCACGGACACGCTCACCGCGTTCCACCTTCTCCAGGACATGTCTCCTTACGTCAAGTTCGCTCATTTCACCGCCAACCAGGCTATCTTAGAGGCCGTAGCCCATGAAAAACGGGTCCACATCGTCGACTTCGACGTGACCGAAGGAGCCCAATGGGCATCCCTAATGCAGTCCCTCTCTTCAAGAAGCACCGGCCCACCTGCCCCACACCTCCGCATTACCGCATTGTCCAGAGGCTCCGCCCCTGGACGGAGATCCATCGCCACCATTCAGGAAACCGGACGGAGGCTAACGGCGTTCGCGGCATCCGTGGGGCAACCGTTTTCTTTTCACCAATGTCGGTTGGACCCTGGCGAAACGTTTCGACCTTCGTCACTGAAACTGATTCGCGGCGAGGCCTTGGTCTTTAACTGCATGCTGCACTTGCCGCACCTGAGCTTCCGAGCCTCAGGTTCCGTTGCTTCGTTTCTGAAAGGTGCGAAGGAGTTGAACCCGAGGGTTGTAATGGTGGTAGAGGAAGAGGTGGCGCGCGGTGGAGATGCCGGCTTTGTGGGCTTGTTTATGGATTCGCTGCAGCACTACTCGGCGGTGTTTGATTCGCTGGAGGTTGGGTTTCCCATGCAGAAATGGGCCCAGGCTTTGGTGGAGCGCGTGTTTTTGGGCCCAAGAATAGCAAATTCTGTGAGCCTTATGTACCGGAGTGGAGGAGAGGACAGAGGATCGTGGGAGGAGTGGTTGGGTGCGGCGGGGTTCAGGGGAGTTCCCGTAAGCTTCGCTAATCACTGCCAAGCGAATCTGTTATTAGGACTGTTTAACGATGGATATAGAGTAGAGGAGATGGGGAACAATAAATTGGTGTTGGGTTGGAAATCACGCCGTTTGATATCAGCCTCTGTTTGGACTTCAAACTCTTGA 1368 0.5651 MDDPDFLDLSKPSITTSSSSEEDWINLWSPLVDWGSLAAGEDNFQTLIDSIAHEDDVVSTPDQTIAQDSDLSSHDEKGLRLVHLLMAAAEALTPGTESHHLARVILVRLNELVSTTHGTNIERLAAHFSSALQNLLDGAGSAHSITTDTPNPTDTLTAFHLLQDMSPYVKFAHFTANQAILEAVAHEKRVHIVDFDVTEGAQWASLMQSLSSRSTGPPAPHLRITALSRGSAPGRRSIATIQETGRRLTAFAASVGQPFSFHQCRLDPGETFRPSSLKLIRGEALVFNCMLHLPHLSFRASGSVASFLKGAKELNPRVVMVVEEEVARGGDAGFVGLFMDSLQHYSAVFDSLEVGFPMQKWAQALVERVFLGPRIANSVSLMYRSGGEDRGSWEEWLGAAGFRGVPVSFANHCQANLLLGLFNDGYRVEEMGNNKLVLGWKSRRLISASVWTSNS 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00208 455 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 70 448 IPR005202 -
Vian7g00208 455 ProSiteProfiles GRAS family profile. 72 452 IPR005202 -
Vian7g00208 455 Pfam GRAS domain family 81 452 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00208 Vian-Chr7 6512338 6513705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00208 71 451 GRAS Transcription Factor Family AT3G03450 33.929 2.20e-55 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian7g00208 GRAS 2.2e-101 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00208 - - pvu:PHAVU_008G165200g 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00208 7 6512338 6513705 Vian7g00208 7 6512338 6513705 ECH
Vian7g00208 7 6512338 6513705 Vian4g01450 4 29162792 29164531 PCT