Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00206 ATGCCACTGAACCGTGGCCAAAGGCAAACCACAAGGTGGTATCATCAGCTATGCTTTGTTCCCACTAGTTCAGATAGTTCAGATGACTCGGACGTAGAATCTGTAATCATTACACCAAGTACTACAATTACAACTAGTAGGACATGGCAAGAACTTTCTCCGCCGCTGCCGCTGCCGCCATCACCACCACCACCACCACCACCACCAAATCCTGAACCTCAAATGGATTGGCGCTTTCTACCACCACCGCCACCACCAGATTTTGTACGGCCACTGTTGCTGCAACAGCATCAGCTTGATCTCAGTGGGGTTTGGGCTATTCTTAACGAAGAAGTACTGCAGGATAGGCTTCAATCTCCCAATATAAGTCATGTTTTTGAAGGTGATAATAGTGGATGCTCAACGATTGCCATGAATGGCCTTAGCAGGGTAAGAGTATCAGAGACAGATAAACTCTTTCTCTGTCCCATTTGCATGGATGAGTTTAAAGTGTGTGATCAAGCATACCGGTTACCCTGCACCCACACCTATTGTTCCGAATGCATTCTTCGTTGGCTTAACAGCAGCAAAACATGTCCAGTTTGCAGGCTTCAATTGAATAATAATAATAATTTGAACTCGCATGTTGAATTTCTATCAACATCATTGTCTTCACCACCATCACCATACTTTCGTTCTCCTCCGCGCCCGGAGTACCTCGTAGAATCTTCTCTCTACCCTACAGCTGGTGTAGAGAACAGTGCAAGTGGTAACTCAGATGAAGCTGATTATGATAGTGCATGTGATGAGCTTGGTGATTCTCAAGAAGATGGTGCTTCTCATACTGCTAATGATTTATGA 840 0.45 MPLNRGQRQTTRWYHQLCFVPTSSDSSDDSDVESVIITPSTTITTSRTWQELSPPLPLPPSPPPPPPPPNPEPQMDWRFLPPPPPPDFVRPLLLQQHQLDLSGVWAILNEEVLQDRLQSPNISHVFEGDNSGCSTIAMNGLSRVRVSETDKLFLCPICMDEFKVCDQAYRLPCTHTYCSECILRWLNSSKTCPVCRLQLNNNNNLNSHVEFLSTSLSSPPSPYFRSPPRPEYLVESSLYPTAGVENSASGNSDEADYDSACDELGDSQEDGASHTANDL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00206 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 221 IPR013083 -
Vian7g00206 279 MobiDBLite consensus disorder prediction 21 52 - -
Vian7g00206 279 Pfam Ring finger domain 155 196 IPR001841 -
Vian7g00206 279 ProSitePatterns Zinc finger RING-type signature. 173 182 IPR017907 -
Vian7g00206 279 SUPERFAMILY RING/U-box 154 202 - -
Vian7g00206 279 ProSiteProfiles Zinc finger RING-type profile. 155 196 IPR001841 -
Vian7g00206 279 SMART ring_2 155 195 IPR001841 -
Vian7g00206 279 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 134 199 - -
Vian7g00206 279 MobiDBLite consensus disorder prediction 243 279 - -
Vian7g00206 279 MobiDBLite consensus disorder prediction 53 81 - -
Vian7g00206 279 MobiDBLite consensus disorder prediction 21 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00206 Vian-Chr7 6457185 6458024 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00206 141 199 C3H Transcription Factor Family AT3G02340 45.000 6.25e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00206 - K11982 vum:124826385 477.248