Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00189 ATGAATTCTACAGAGAAAGTCACTCCAAGAAAAAGAGCATCCAAGAGTAGTACACCGAAGAATAGCACACCGAAAAAGAATAGCACGCCAAAGAGGAAGCGCACGCCGAATAAAACACCTAACAAAACTAAATCAGCTGTTTCTTCACCAGTGTCTGCTCAGAAGATTGATCTGAGGTTGGAGGCAAAGCTGTCTGCGGAGATTGATGCGAAGGTGTACGCTGGGCGGAGAATACATCCCTTTTTTTCCTTGTGGAAGGAGGAAAATGAACAACGCCGACAAGCTTTATTGGCTAGGAGGAAAGCAAAAGGAATTAGTGATTCCATCCATGTATTTGAAGATGCTCAGGATAATGCCTCACCCATTGACTGGAGTGACTGGACATTTTTGGATAATACCACAGTTGCATATTTGGATAGTCAGAATTCAAATTTATCTTTTATGGAGGATTCGGTTGAATCCTTAAATTTTGATAACATACATAGTGCGTCTGAAGAGGATGTCATGGATTATCCAAGTCAACTTTCTATACAGTCAGATAATAAGCTGGACATATCACTACCAAATTCAGAAGTTAAATGTCTTTTGAAGACCGAAGAAATTAAATGTCTTTTGAAGACCGAAGATGTCGATGTGGACCTGAACTTGGAGGTGAATGAAAATACAGGATACAAGGACATTTTCACAGAGCAGGAACCACAAGCAAGAATAAGGCATAATTGTGAAGGTAACAACAACTTATGGATAGACAAGTACAAGCCAAAAAAAGCTTTTGAGGTGTGTGGTAATGAAGAGGCTATGAATTTCTTGCGTGACTGGTTACATCTTTGGCATAAAAGACTTTCTCAGTGTAAAAAAAGTTGTGATAGACAAGATGGTTCAGAAGATATCCATCACGCTCCTCTGCAGAATGTTCTCTTGATTACAGGACCAATTGGGAGTGGCAAGTCTGCAGCTGTGTATGCCTGTGCCCAAGAGCAAGGGTTTAAAGTTGTAGAGATCAATGCATCAAGTTGTCGAAACGGAGCTGCTATCACTTCTATCAAGAATAAAATAGAAGAACCTGGTGCAGGCAAAATCACAAGTTGTTTCAAACCTGTGAAGTTGTTTCCTGTTGATGAAGCCCGCCAAACTTTAATTCTAGTTGAGGATGTGGACATCATTTTCCCTCAAGATCGTGGCTATAGCAGCTTCAACTCTTTTGTGATTTTCTTCTTTTCTATCGCAACTATCCCCACACTCATTAAACATCATTCTACCTCTAATATCATTGTGTTTGCTTATGTTTCCGAAATTCGACTTGACAGTAACTACTTCGCCATGATGGCGGTTCTAGTTGTTAACATGGTTTGTCACCCTCATCATCATGATCTTACTCATCTTTGCCACCTCCACGCGATTGAACCACTCCTTGAGGCATCTCCTTGA 1428 0.4055 MNSTEKVTPRKRASKSSTPKNSTPKKNSTPKRKRTPNKTPNKTKSAVSSPVSAQKIDLRLEAKLSAEIDAKVYAGRRIHPFFSLWKEENEQRRQALLARRKAKGISDSIHVFEDAQDNASPIDWSDWTFLDNTTVAYLDSQNSNLSFMEDSVESLNFDNIHSASEEDVMDYPSQLSIQSDNKLDISLPNSEVKCLLKTEEIKCLLKTEDVDVDLNLEVNENTGYKDIFTEQEPQARIRHNCEGNNNLWIDKYKPKKAFEVCGNEEAMNFLRDWLHLWHKRLSQCKKSCDRQDGSEDIHHAPLQNVLLITGPIGSGKSAAVYACAQEQGFKVVEINASSCRNGAAITSIKNKIEEPGAGKITSCFKPVKLFPVDEARQTLILVEDVDIIFPQDRGYSSFNSFVIFFFSIATIPTLIKHHSTSNIIVFAYVSEIRLDSNYFAMMAVLVVNMVCHPHHHDLTHLCHLHAIEPLLEASP 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00189 475 Gene3D - 245 434 IPR027417 -
Vian7g00189 475 Pfam ATPase family associated with various cellular activities (AAA) 306 392 IPR003959 GO:0005524|GO:0016887
Vian7g00189 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 397 IPR027417 -
Vian7g00189 475 MobiDBLite consensus disorder prediction 1 52 - -
Vian7g00189 475 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 7 397 IPR004582 GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00189 Vian-Chr7 6139897 6147288 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00189 248 394 Core DNA Replication Machinery Family AT5G22010 26.667 6.92e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00189 K26118 - vum:124821504 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00189 7 6139897 6147288 Vian7g00189 7 6139897 6147288 ECH