Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00158 ATGGAATATGGCAGATTGGGGCCCGCTGACCCAGGTGGCTCCTCCCGCCGCTCCATCGCTCCTTTTACCTTACAACCCCTCCCTTCATCTTCCAAAACCAGCAAAAGAAAACTCATCATTGTCTCAATTCTCGCAGCCGCCTTAATCGTCGCCGCTGTCATCTCCGCCGTCCTCGTCACCGTGGTCCGCTCCCGCTCCTCCAGTAACCAGAACGGGTCCAACCTATCCCGCAAGCCTACTCAGGCAATATCCCGAACCTGCAGCAAGACACGTTTCCCCGCCTTATGCATCAACTCCCTCATCGACTTCCCCGGCTCCACCACTGCCTCGGAGCAAGACCTCGTCCACATCTCATTCAACATGACCCTCCGCCACGTCAGCAGGGCGTTTTTCGCCTCGTCCGGCCTCTCCTTCGCTGCCACAGAACCCAAAGTTCGGGCGGCGTACGAGGATTGCCTCGAGCTATTGGAGGAGTCAATGGAAGCTCTTTCTCGATCCCTCGACTCCATCCTCTCCCCTTCCACTATATCCGACAGCGGCGGGTTGAGACCTGGCTCTGATGGATCTACCGACGATGTGATAACGTGGCTCAGCGCCGCTCTCACTAATCATGACACGTGTGCGGAGGGGTTTGAGGACTCGAGCGGGAGCGTGAAGGATCAGATGGTGAATAACTTGAAGGACTTGTCTGAACTCGTGAGCAATTGTCTCGCTATATTCTCTGCGAGTGGAAGTGGCGATTTCTCGGGGGTGCCTATTCAGAATAAGAGACGATTAATGGAAGAAGATGATGAAGCTAATGTTTCCGATGATATCTTGGCGAAATTTCCGAGATGGTTGAATAAACGTGATAGAAGATTATTGAGTTTGCCAAAGCCAGCAATTCAGGCAGATATAGTGGTGTCTAAGAACGGTGACGGAACAGTGAAGACAATAGCGGAGGCCATTAAGAAGGTGCCAGAACACGGCAGTCGCCGGTTCATCATTTACGTGAGGGCAGGAAGGTATGAGGAGAATAATTTAAAGGTGGGCAGAAAGAAAACGAATGTGATGTTTATAGGAGATGGGAAGGGCAAAACTGTCATTACAGGAAAAAAGAATGTGATAGATGGCATGACCACATTCCACACTGCATCCTTCGCTGCTAGTGGTGCTGGATTCATGGCACGAGATATCACGTTCGAGAACTACGCTGGACCGGTGAAGCACCAAGCGGTGGCGCTCCGCGTTGGAGCCGATCACGCGGTGGTGTACCGGTGCAACATCATGGGGTACCAAGACTCTCTCTACGTCCACTCTAACCGACAATTTTTTCGTGAATGTGACATTTACGGTACTGTAGACTTCATATTCGGCAATGCTGCGGTCGTCTTCCAAAAATGTAATATTTATGCCCGTAAGCCCATGGCCCAACAGAAGAACACCATTACAGCCCAGAATAGAAAAGACCCAAATCAGAATACAGGCATATCCATGCACAATTGTCGGATCCAACCTGCTTCGGATCTTGTACCGGTTAAGGGCAGCTTTCCCACCTATTTGGGCCGTCCATGGAAGCAGTTCTCTAGAACAGTGTTCATGTTATCCTACATGGGTGACCTCATAGATCCTAGTGGATGGTTGGAATGGAATGGAGACTTCGCTTTGGACACATTGTATTATGGTGAGTACATGAATTATGGTCCGGGTGCAGCTGTGGGCCAACGGGTCAAATGGCCTGGATACCGGGTCATTACTTCTTCTGTGGAGGCAAATAGGTTCACGGTGGCCCAGTTTATATCCGGGTCAGCCTGGTTACCATCCACTGGAGTGGCTTTTGCGGCCGGGTTATCCGCATGA 1839 0.5117 MEYGRLGPADPGGSSRRSIAPFTLQPLPSSSKTSKRKLIIVSILAAALIVAAVISAVLVTVVRSRSSSNQNGSNLSRKPTQAISRTCSKTRFPALCINSLIDFPGSTTASEQDLVHISFNMTLRHVSRAFFASSGLSFAATEPKVRAAYEDCLELLEESMEALSRSLDSILSPSTISDSGGLRPGSDGSTDDVITWLSAALTNHDTCAEGFEDSSGSVKDQMVNNLKDLSELVSNCLAIFSASGSGDFSGVPIQNKRRLMEEDDEANVSDDILAKFPRWLNKRDRRLLSLPKPAIQADIVVSKNGDGTVKTIAEAIKKVPEHGSRRFIIYVRAGRYEENNLKVGRKKTNVMFIGDGKGKTVITGKKNVIDGMTTFHTASFAASGAGFMARDITFENYAGPVKHQAVALRVGADHAVVYRCNIMGYQDSLYVHSNRQFFRECDIYGTVDFIFGNAAVVFQKCNIYARKPMAQQKNTITAQNRKDPNQNTGISMHNCRIQPASDLVPVKGSFPTYLGRPWKQFSRTVFMLSYMGDLIDPSGWLEWNGDFALDTLYYGEYMNYGPGAAVGQRVKWPGYRVITSSVEANRFTVAQFISGSAWLPSTGVAFAAGLSA 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00158 612 Gene3D Invertase/pectin methylesterase inhibitor family protein 80 243 IPR035513 -
Vian7g00158 612 Pfam Pectinesterase 298 595 IPR000070 GO:0030599|GO:0042545
Vian7g00158 612 Gene3D - 292 610 IPR012334 -
Vian7g00158 612 PANTHER PECTINESTERASE 51 600 - -
Vian7g00158 612 FunFam Pectinesterase 292 610 - -
Vian7g00158 612 CDD PMEI-like_3 87 242 - -
Vian7g00158 612 FunFam Pectinesterase 79 243 - -
Vian7g00158 612 SUPERFAMILY Pectin lyase-like 294 609 IPR011050 -
Vian7g00158 612 ProSitePatterns Pectinesterase signature 2. 443 452 IPR033131 -
Vian7g00158 612 SMART PMEI_2 78 239 IPR006501 GO:0004857
Vian7g00158 612 Pfam Plant invertase/pectin methylesterase inhibitor 82 239 IPR006501 GO:0004857
Vian7g00158 612 NCBIfam pectinesterase inhibitor domain 52 240 IPR006501 GO:0004857
Vian7g00158 612 Coils Coil 146 166 - -
Vian7g00158 612 MobiDBLite consensus disorder prediction 1 30 - -
Vian7g00158 612 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 81 241 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00158 Vian-Chr7 5407485 5411320 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00158 1 611 Carbohydrate Esterase AT5G53370 62.500 0.0 794
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00158 - - gmx:106796002 983.4