Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00143 ATGGAACCCCAGAAAACTCCATCAATAGATGACAGCTTATTTGATATTTTCAAAGATACGGAGTTTGGGGACCTCCTTTCCATCTTGGAGAGCCTACAGGACTCGAAAGATTTTGCCCCCATCAACGATAGTGCTGTTATTATCAACCCAACTTCGAAAGAAAACGAGCAAATCGAGTCCCGAAAGGTCTCAATATCTTCAAGTGTTCCACAAGATTCTGAAACGGAGCTTGAAAGCAAGACAAAAAAGCTTAGCCCCACCTTGGCAGAGGAACCACAGAAGGTGTCTCATATAACAGTGGAGCGCAACCGAAGAAAACAAATGAATTACAACTTGTCCGTATTGAGATCACTTTTGCCTTCCTTCTATGCCAAACGGCCTGGCAGCCCTTACAAACCAAGTTACCTTTCTCCAACTATACCCAACTCTCCTACTTCTTCGGCTTCTTCTTCAATCAACGATAATATCAAAGAGCTTGTTGCCAATTCCAAGTCTGTTATCGCCGATGTTGAGATTGGAATTGAATGCCAACTCAGTGCCGAAGAACTCGCTCAACAAATCCAGCAAACATTCTACTAA 579 0.4301 MEPQKTPSIDDSLFDIFKDTEFGDLLSILESLQDSKDFAPINDSAVIINPTSKENEQIESRKVSISSSVPQDSETELESKTKKLSPTLAEEPQKVSHITVERNRRKQMNYNLSVLRSLLPSFYAKRPGSPYKPSYLSPTIPNSPTSSASSSINDNIKELVANSKSVIADVEIGIECQLSAEELAQQIQQTFY 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00143 192 Gene3D - 86 169 IPR036638 GO:0046983
Vian7g00143 192 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 92 159 IPR011598 GO:0046983
Vian7g00143 192 PANTHER TRANSCRIPTION FACTOR FAMA 22 127 IPR044283 GO:0003700|GO:0010052
Vian7g00143 192 Pfam Helix-loop-helix DNA-binding domain 93 126 IPR011598 GO:0046983
Vian7g00143 192 MobiDBLite consensus disorder prediction 51 87 - -
Vian7g00143 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 126 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00143 Vian-Chr7 5014514 5016798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00143 17 126 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 36.719 3.14e-13 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian7g00143 HLH 7.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00143 K20558 - gmx:100789392 164.466