Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00129 ATGCAAGTTGGACAAGGAACCTACAACAATGTTTATAAAGCTCTGGATAGAGACACACAAGAAATTGTGGCCCTGAAGAAGGTCAAGTGCTATATGCATCAATTACTTCCAGGTCTGCAGCATTGCCATGATATGGGAATTCTTCACCGAGTTATAAATGGGTCAAACCTTTTGTTTGATAAAAATGGGATGCTTCAAATTGTAGATTTTGGACTTGCCAATTTTTATGGTCCAGATTATCATGAGCCTCTCACTAGTCGTGTTATGACGCTATGGTACAGAGTTCTTGAATTGTTGTTAGGTGACACAGACTATGGAGTTGGTGATAATTTGTGGAGTAGTGAATGTCTTCTGGCAGAAATGTTCAAAGGATTCCCAATCATGCCTAGCAGAAATGAGAGAGCTTCTTCCCTCTTCGCTTTGGTTCTGGCAAGGGTTTGCAGGAAGGGGTTACGCGTTCAAGTGCGACGGAGGCCAGGTGAGGGCGCGACTTGGCTTCTGCGTTTCACGGTGAAGTTTTTGAAACGCGATTTGGAGTCCTACCATTACGACACTCGGATTGGTGGTTGTGTTTTGAGATTTTTGGATTTGGGCTTTTTCTTGAAAGGTTTCAAATTGGGGAAATGTTGTGGGTCTGATGCTCGCGGTCTCTGGTTTGGGCCTAGATACACCACCAACTTGTCCTGGGAAACACCACCAATTCCATTCATCCATGAAATCCCCCATCAGAGCTTCATATGCATCCTTCGCAGCCAACATCAAAATGAAAACTTTGCAAAAGAATTGTGCATACCTTGCCAGTCTCAGCTTCATCAGGAACCTTTAGCAATCAACATTAACCTCCGACAACCACTGACAAGGGAAAAGGGTCTCCTCCTCAAATTCCTGAAATCCTCCTCAATCTCCTTCTTCATCAGCATCAGAGAAAACTTCAGTGGTCGCTCCTCTTTCTCCGGCGACCCTCTTAATTTCGGAGACTTTTTGGCGCCGGGGACACTCTTCAACGGCGTTTACGACGTCCCGACCCCGACCTTCCTCTCGTCAATCCTGAGCGTCACGGGAGCGATTGGGTTTTGGGTTTGCTTTGGTGTCTTCTTGCATGTATCGCGAGTCGCAACAGCGACATTGGGTTTTTAG 1137 0.4582 MQVGQGTYNNVYKALDRDTQEIVALKKVKCYMHQLLPGLQHCHDMGILHRVINGSNLLFDKNGMLQIVDFGLANFYGPDYHEPLTSRVMTLWYRVLELLLGDTDYGVGDNLWSSECLLAEMFKGFPIMPSRNERASSLFALVLARVCRKGLRVQVRRRPGEGATWLLRFTVKFLKRDLESYHYDTRIGGCVLRFLDLGFFLKGFKLGKCCGSDARGLWFGPRYTTNLSWETPPIPFIHEIPHQSFICILRSQHQNENFAKELCIPCQSQLHQEPLAININLRQPLTREKGLLLKFLKSSSISFFISIRENFSGRSSFSGDPLNFGDFLAPGTLFNGVYDVPTPTFLSSILSVTGAIGFWVCFGVFLHVSRVATATLGF 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00129 378 SMART serkin_6 1 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00129 378 ProSiteProfiles Protein kinase domain profile. 1 200 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00129 378 SUPERFAMILY Protein kinase-like (PK-like) 3 135 IPR011009 -
Vian7g00129 378 Pfam Protein kinase domain 28 135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00129 378 Gene3D Transferase(Phosphotransferase) domain 1 13 166 - -
Vian7g00129 378 PANTHER CELL DIVISION PROTEIN KINASE 28 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00129 Vian-Chr7 4736713 4740584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00129 24 141 Core Cell Cycle Gene Families AT5G64960 49.167 5.79e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vian7g00129 Pkinase 1.2e-22 CL0016