Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00124 ATGTGGAGAGAGAGTGCGTTATTGGTGATTCTGCTGTTTCGATTTCAGCAAATTTCTGCTACAAAGCACTATGTTCATTCGTGTCTCCCTTCTTCCTGTGGCAAAGTCACCAACATAACGCATCCATTCCGACTAAAAGGCGACCCAGATCGCTGCGGCGACCACAGGTATGAGCTCGCCTGTGAAAATAACGTTACAATTTTATCTTTGTACTCCGGAAAATACCATGTGCAGGCCATCAACTACAATAATTTCACAATCCGAGTGGTTGATCCCGGTGTTCGGCAATCAAATTGCTCCTCCATTCCTCGCTATTTCTTGTCTCCATCCAATTTCAGTGATACCTATAATTACCTCGATATTGATATGGATGCATACCAAATTACTCAAGAACGATCCGAACCTACCTATTTTAATCATATAAGAATGTACGAAGTTATTCCAAAGCCGGTTTCTGAACATGTAGTTTTCATGAATTGTAACCATTCCGTGAGTGACAATGGTAAGTACGTAGATACTGCTCCCTGCGTGAATTGGCACTCCAAAGGTTATACATATGCTATAGCTGGGGACCTAATATCCGAGGACTTAGAAGTTGGTTGTAATGTAAAGCTGGTTACTCCCACATCTTGGTGGGGTTTGCGCACACCTCAATATTCCTACAGTGAGATGCACAAGGCACTAGCGTATGGGTTTGAGATTTCGTGGATGAATCGCGCCTGCAAGGACATTTGTGCAAATTCAATGGATAGGTCCTGCATATGGGACACTTCCGGGAGGGTTGATTGCTCGCCCAACTGCCACAGGTTCCTGTCAATTTTGAGTATATGTGATGGCACGCCAATATGGTACCAGCTTTTATTATATGCAAGAGATACTATTTATACTGCCTGGATAGGTCTGGTTGAAACATTAAAAGGACAAAAAGAATTTGATGGTTTCGGCAACAATAAATTAGGTTTAATTATTGGACACTACGTTTTACCATCCTTCTTGCTAGGCAAATTTTTTTTTGGGATGACGTTATTTATTGCACTATTGATATACAAATGGAAAAGTCGGCATTTGTCCATGTACGAAAATATTGAAAATTACTTGGAACATGCCAATTTGATGCCTATCAGATACTCATACAAGGAAATCAAGAAAATGACTGGAGGTTTCAAGGATAAATTGGGTGAAGGAGGATATGGTTCTGTGTTTAAGGGAAAGTTGTCTAGTGGACCTTATGTGGCAATAAAAATGTTAGGTAAATCAACAAGTAATGGTCAAGATTTTATCAGTGAAGTTGCAACTATCGGAAGAATTCATCATCAAAATATTGTAAAATTGGTTGGATTTTGTGTTGAAGGATCAAAACGTGCTCTTATTTACGAATTCATGCCTAATGGATCTTTGGATAAAATTATTTTTTCCAAAGATGGAAATATACATTTAAGTTATGATGAAATATATCATATTTCAATTGGAATAGCTAGAGGGATAGCTTATCTTCATCATGGGTGTGAGATGCAAATTCTGCATTTTGATATCAAACCCCACAACATCTTACTAGATGGAAAGCTCACCCCAAAGGTCTCGGACTTTGGATTGGCAAAATTATATCCAATAGATAATAATGTTGTTACAATGACAGGAGCAAGAGGAACCATTGGGTATATGGCTCCAGAATTATTTTATAATAACATTGGAAGAATATCTCAGAAGGCTGATGTTTATAGCTTTGGAATGCTTCTTATGGAGATGACAAACAAAAGAAAAAAACCTAAATCCACATGCACAACATTCAAGTCAATTGTATCTTCCTTTTTGGATTTATAA 1821 0.3817 MWRESALLVILLFRFQQISATKHYVHSCLPSSCGKVTNITHPFRLKGDPDRCGDHRYELACENNVTILSLYSGKYHVQAINYNNFTIRVVDPGVRQSNCSSIPRYFLSPSNFSDTYNYLDIDMDAYQITQERSEPTYFNHIRMYEVIPKPVSEHVVFMNCNHSVSDNGKYVDTAPCVNWHSKGYTYAIAGDLISEDLEVGCNVKLVTPTSWWGLRTPQYSYSEMHKALAYGFEISWMNRACKDICANSMDRSCIWDTSGRVDCSPNCHRFLSILSICDGTPIWYQLLLYARDTIYTAWIGLVETLKGQKEFDGFGNNKLGLIIGHYVLPSFLLGKFFFGMTLFIALLIYKWKSRHLSMYENIENYLEHANLMPIRYSYKEIKKMTGGFKDKLGEGGYGSVFKGKLSSGPYVAIKMLGKSTSNGQDFISEVATIGRIHHQNIVKLVGFCVEGSKRALIYEFMPNGSLDKIIFSKDGNIHLSYDEIYHISIGIARGIAYLHHGCEMQILHFDIKPHNILLDGKLTPKVSDFGLAKLYPIDNNVVTMTGARGTIGYMAPELFYNNIGRISQKADVYSFGMLLMEMTNKRKKPKSTCTTFKSIVSSFLDL 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00124 606 PANTHER RUST RESISTANCE KINASE LR10-RELATED 359 589 IPR045874 GO:0004672
Vian7g00124 606 SMART serkin_6 386 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00124 606 Pfam Wall-associated receptor kinase galacturonan-binding 28 91 IPR025287 GO:0030247
Vian7g00124 606 ProSitePatterns Protein kinases ATP-binding region signature. 392 414 IPR017441 GO:0005524
Vian7g00124 606 FunFam serine/threonine-protein kinase PBS1-like 355 460 - -
Vian7g00124 606 ProSiteProfiles Protein kinase domain profile. 386 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00124 606 Gene3D Phosphorylase Kinase; domain 1 360 460 - -
Vian7g00124 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 506 518 IPR008271 GO:0004672|GO:0006468
Vian7g00124 606 Pfam Protein tyrosine and serine/threonine kinase 388 595 IPR001245 GO:0004672|GO:0006468
Vian7g00124 606 Gene3D Transferase(Phosphotransferase) domain 1 461 604 - -
Vian7g00124 606 FunFam Os07g0541700 protein 461 550 - -
Vian7g00124 606 SUPERFAMILY Protein kinase-like (PK-like) 371 591 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00124 Vian-Chr7 4677288 4680603 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00124 28 588 Receptor kinase-like Gene Family AT5G38260 31.504 9.76e-79 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vian7g00124 PK_Tyr_Ser-Thr 1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00124 - - gmx:106794110 769.615