Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00121 ATGCACACAGCAACGATGAAAAGACGAGTAAGAATACCTATCGTCGTCATCCTTCTACTTATACAAACTTGCGCCGCCGCGCTCAGCTCCAACTGCCCTGCTTCCTCCTGCGGCAACATTCCCAACATAAGTTACCCCTTTCGACTCGGCGGTGACCCATCTCACTGCGGCGACACGAGGTACCAATTGCAGTGTGAGAACAACGCAACTCTTCTTACCCTGTTTTCTGGTAAATACAGAGTCCAAGAAATCGATTACAAGAGATACAAAATCCGAGTGAGTGATGCGGAGGACGGTACCTGCTCCTCCATGCCTCGCTATTTCTTGCAGTCCGGCAATTTTAGTAACGATTTAATTGGTCCTGGGAGGGATCTGCTGAAATTGGAACCATTTTTTCAACCGTCGATAGCGTATTTCAATTGCAGCTATCCAATCGCTGATGATCCTAGATATGTTGCTGTTGAAGCCAGTGGTTGCGACCTGAGAGGACACGTGTATGCTTTTGTTAGGGATTCGCAAAACGGTTTTGGTGTGAAGGACATCAAGGTTGGGTGCCAGCTGGTGGTGGCTACTTTTGCTGGTGTGGGAGAGCACAAGTCCAACGAAGCAATTTCGTACAGTGAAATCTACAAAATGCTTTCGCAGGGATTTGAACTCTCTTGGTTGTATCTTATCTGTGAAAATCGATGCGGAAAGGGAGTAGATTGTAGTGTTGATGAATCCACACATGAAGTTCGGTGCCAGCAAGACTGCCGTTATATCTATGAAGAACCTAACTCAGTCACATACGAATGCAGCAGCGGTAGTAATGCAAACATAATATACGTAATAGTTTTATTTTGCATTGGTCTTTATAGAGGATTGATGCGAAATTTTGGCTTGAATAAAGCTACAGGATATGATGGTGATATAGCAGCTGAAATAGGAAAAGGTGTCGGAAGGTATATCTTACCGTACTTTATAATACGATTTATATTTGGTGTGGTAGCTTTTGCTGTGTTGTTGATATATAAATGGGGAAGAAGACATAAATCAAAGTATGAAAATATTGAAGCTTTTCTACAAGAAAATACCCTCGCGCCAATAAGATACTCATATAAAGAAATAAAGCACATGACGAGGGGTTTTAAGGAAAAGTTAGGTCAAGGAGGATTTGGCTTGGTATACAAAGGAAAGCTGCGTAGTGGGTCATTTGTTGCGATAAAGATGTTGAGTAAATCAAAGTCTGATGGGCAAGATTTCATTAGTGAAGTTGGTACTATTGGAAGAATACATCATACAAATGTGGTGCGACTTATTGGATTTTGTGTGGAATCATCAAATCATGCTCTTGTTTATGAATTCATGCCTAATGGTTCTCTTGATAAATATATTTTTTCCAAGCAAGATATTATCTCTTTAACTCATAGACAAATATACGAGATTTCTCTTGGAGTGGCTCGTGGTATTGCTTATTTGCATGAAGGTTGTGACATGCAAATTTTACATTTTGATATCAAGCCACATAACATCCTTTTGGACGAAAACTTTGTCCCAAAGGTTTCAGACTTTGGCTTGGCAAGACTTTATCCTACAGACAAAAGTATTATCACTTTGACTGATGTCAGGGGAACACTTGGATACATGGCGCCCGAGTTATTTTATCATAATTTTGGAGGAGTGTCATACAAGGCAGATGTTTATAGTTTTGGAATGCTTTTGATGGAAATGACAAATAGAAAAAGAAACTTTAATCCACATGCAAATGATTCAAGTGAATTTTTTTTTCCTCTTTGGATATACCATCAATTGAGTGGGGAAAATGAGATAGAAGGAGAAAATGTTACGAAGCAAGAATACAATGATGAGATAAAGAAGATGTTTTTAATAGCATTATGGTGTATACAACTGAAGCCAAGTGATCGTCCTCCCATGATCAAAGTAGTGGAGATGTTGGAAGGAGAACTTGAGAATATTGAAATGCCTCCAAAACCTTCTCTCTATCAGATAAATGATCACAAAACTAAATCCTACGAAACCTCTTCAAATGATTATAGTGGATCGACAAGTTATACTGAGGAAAGCATTGTTCATATTTCTCATATTTCTTCTGAATTTTCTACTTGA 2106 0.3927 MHTATMKRRVRIPIVVILLLIQTCAAALSSNCPASSCGNIPNISYPFRLGGDPSHCGDTRYQLQCENNATLLTLFSGKYRVQEIDYKRYKIRVSDAEDGTCSSMPRYFLQSGNFSNDLIGPGRDLLKLEPFFQPSIAYFNCSYPIADDPRYVAVEASGCDLRGHVYAFVRDSQNGFGVKDIKVGCQLVVATFAGVGEHKSNEAISYSEIYKMLSQGFELSWLYLICENRCGKGVDCSVDESTHEVRCQQDCRYIYEEPNSVTYECSSGSNANIIYVIVLFCIGLYRGLMRNFGLNKATGYDGDIAAEIGKGVGRYILPYFIIRFIFGVVAFAVLLIYKWGRRHKSKYENIEAFLQENTLAPIRYSYKEIKHMTRGFKEKLGQGGFGLVYKGKLRSGSFVAIKMLSKSKSDGQDFISEVGTIGRIHHTNVVRLIGFCVESSNHALVYEFMPNGSLDKYIFSKQDIISLTHRQIYEISLGVARGIAYLHEGCDMQILHFDIKPHNILLDENFVPKVSDFGLARLYPTDKSIITLTDVRGTLGYMAPELFYHNFGGVSYKADVYSFGMLLMEMTNRKRNFNPHANDSSEFFFPLWIYHQLSGENEIEGENVTKQEYNDEIKKMFLIALWCIQLKPSDRPPMIKVVEMLEGELENIEMPPKPSLYQINDHKTKSYETSSNDYSGSTSYTEESIVHISHISSEFST 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00121 701 ProSitePatterns Protein kinases ATP-binding region signature. 380 402 IPR017441 GO:0005524
Vian7g00121 701 ProSiteProfiles Protein kinase domain profile. 374 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00121 701 SMART serkin_6 374 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00121 701 PANTHER RUST RESISTANCE KINASE LR10-RELATED 346 666 IPR045874 GO:0004672
Vian7g00121 701 FunFam serine/threonine-protein kinase PBS1-like 342 448 - -
Vian7g00121 701 Pfam Protein kinase domain 377 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00121 701 SUPERFAMILY Protein kinase-like (PK-like) 359 646 IPR011009 -
Vian7g00121 701 FunFam PR5-like receptor kinase 449 657 - -
Vian7g00121 701 Gene3D Transferase(Phosphotransferase) domain 1 449 659 - -
Vian7g00121 701 Gene3D Phosphorylase Kinase; domain 1 337 448 - -
Vian7g00121 701 ProSitePatterns Serine/Threonine protein kinases active-site signature. 494 506 IPR008271 GO:0004672|GO:0006468
Vian7g00121 701 Pfam Wall-associated receptor kinase galacturonan-binding 32 95 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00121 Vian-Chr7 4623431 4639688 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00121 14 661 Receptor kinase-like Gene Family AT5G38260 33.185 1.29e-105 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vian7g00121 Pkinase 9.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00121 - - pvu:PHAVU_001G075800g 984.941