Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00120 ATGTTCTTGAGCGAAGTTATGAATCAAACCGAAGCATGTTCCAATATCTTTGTAGGAATAGCTAGCAGAATAACATTCAGTACGAAACAATTGGACAACCCTGTTGGACTGCAATATTTTTATGGAGGAATATTCATAGGACGACAAATTATACCAATATTTTTGGCTGCCAGATATCTGTTTGGAGTTGTACTTATTCTTGTGCTATTGATCTACAAATGGCGACGAAAACATTCTTCAATATACGAAAATATTGAAAATTTCTTGCTAGATAGCCATCTAAATCCCATTAGGTACGAGTACAAAGAAATAAAAAAAATGACTGGAGGTTTCAGAGTGAAATTGGGTCAAGGAGGCTTTGGTGCTGTATATAAAGGAAAACTCCAAAGTGGGTTGGATGTAGCAGTAAAGATGTTGAGCAAATCTAATGATAATGGACAAGATTTCATGAATGAAGTTGCTACCATTGGAACAATACATCATGTAAATGTGGTGCGTCTTCTTGGATACTCTGTATATGGAAAAAAGCGTGCTCTAGTTTATGAATTTATGTCAAATGGATCACTAGATAAATATATTTTCTCCAAAGAAGAAAATACTCGTTTAAGTTATGAGAAAATATATGAAATATCTCTTGGAATAGCCGGTGGAATTTCATATTTGCATCAAGGTTGTGATATTCAAATTTTGCATTTTGATATCAAGCCTCATAATATTCTTTTAGATGACAACTTTGCTCCAAAGGTTTCAGATTTTGGACTTGCAAAGCTACATGCAGCAAATGATGGTGTTATCAATATGACTACAGCAAGAGGAACATTGGGTTATATGGCTCCAGAGTTGTTTTACAAAAATATGGGTGGAGTATCTTATAAAGCTGATGTGTATAGTTTTGGAATGCTTCTAATGGAAATGGCAAGTAGGAGAAGGAACTCAAATCCTCATGCAGAACATTCAAGTCAAAGTTACTTTCCCTTTTGGATTTATGATCAATTTCATGAAGAGAAAAATATTGATATAGAAGATGCTTCAGAAGAGGAAAATATTCTAGCTAAAAGGATGTTCTTGGTAGCACTTTGGTGTATTCAGTTAAATCCAAGTGATCGGCCTTCAATGAACAAGGTAATAGAGATGCTTGAAGGGATGATTGAAGGTCTTGAATTGCCTCCAAGGCCTTCATTTTATAAAAATGAAACATACAGACATGAAAAAATTAGCTCAGTACATGAAAATATTAGCTCTGACTTTTCTGAATTCACTTACTCTGATAGTCAATCTAATAAAAGCATATCATTATATTGA 1302 0.3395 MFLSEVMNQTEACSNIFVGIASRITFSTKQLDNPVGLQYFYGGIFIGRQIIPIFLAARYLFGVVLILVLLIYKWRRKHSSIYENIENFLLDSHLNPIRYEYKEIKKMTGGFRVKLGQGGFGAVYKGKLQSGLDVAVKMLSKSNDNGQDFMNEVATIGTIHHVNVVRLLGYSVYGKKRALVYEFMSNGSLDKYIFSKEENTRLSYEKIYEISLGIAGGISYLHQGCDIQILHFDIKPHNILLDDNFAPKVSDFGLAKLHAANDGVINMTTARGTLGYMAPELFYKNMGGVSYKADVYSFGMLLMEMASRRRNSNPHAEHSSQSYFPFWIYDQFHEEKNIDIEDASEEENILAKRMFLVALWCIQLNPSDRPSMNKVIEMLEGMIEGLELPPRPSFYKNETYRHEKISSVHENISSDFSEFTYSDSQSNKSISLY 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00120 433 Gene3D Transferase(Phosphotransferase) domain 1 184 388 - -
Vian7g00120 433 PANTHER RUST RESISTANCE KINASE LR10-RELATED 82 399 IPR045874 GO:0004672
Vian7g00120 433 FunFam serine/threonine-protein kinase PBS1-like 78 183 - -
Vian7g00120 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Vian7g00120 433 ProSiteProfiles Protein kinase domain profile. 109 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00120 433 FunFam PR5-like receptor kinase 184 390 - -
Vian7g00120 433 SMART serkin_6 109 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00120 433 Pfam Protein tyrosine and serine/threonine kinase 113 379 IPR001245 GO:0004672|GO:0006468
Vian7g00120 433 Gene3D Phosphorylase Kinase; domain 1 86 183 - -
Vian7g00120 433 ProSitePatterns Protein kinases ATP-binding region signature. 115 137 IPR017441 GO:0005524
Vian7g00120 433 SUPERFAMILY Protein kinase-like (PK-like) 94 380 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00120 Vian-Chr7 4605030 4606331 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00120 98 419 Receptor kinase-like Gene Family AT5G38280 49.847 5.89e-105 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vian7g00120 PK_Tyr_Ser-Thr 3.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00120 - - gmx:100820366 672.544