Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00093 ATGATCAAAATTTTCATGAACATGGCTTTCAAGAACCATTTACTGGTGTTCATCATGACGGTTCTTTTTTTCATTTCTAATGTTCAAGCACAAAACAATGACACAGATAGCATGCAAGATCTTCCTCAACCTGTTCGTCCAAGCAAGATGGTTGTAGTATTGGCCCTCTCAATATTGTTCACTATATCATTTCTCTTACTTGTCTACATAAGGTTCCGCAGAAGCATCCCTCTTGAACTTACCAACAGAAGGAGCCCTGATTCACCAAATTTTCAAGCACAAACACAATCAAGATCAAGACATTCAGGGATAGACAGGAAAGTGATTGAAGCACTCCCATTTTTCATGTTCTCTTCCCTTAAGGGGTCCAAACAAGGCCTAGAGTGCACAGTTTGCTTGTCACAGTTTGAGGACACTGAGATTCTTAGGCTCTTGCCAAAGTGCAAACATGCTTTCCACATGAATTGCATTGACAAGTGGTTAGAAAGTCACTCTACATGCCCTCTTTGCAGGAATAATATTGACCCCTTAGACATCAAGAACTTCACCTACTCAATCAGTTCAAGGTCCCTAAGAGTTCCTTCAAATTTAACCGATGACACTAACCTTGAAATCTTTGTACACAGGGAACCTTCTTCCCATCAAGGCTCATCATCATCATCAAGGTTTAACATCGGAAGCATGTTTTGGAATTTGGGTTGGAGCAACAAGAAAAAGCTTCTCGTTGACCAAGAGGTTTGTGGAACAAATGGGACACACGTGCACAAGTTCTATCACAAAATTGTTGTCTCTGATGTTGTTAGAAGAAGCAGGTGGAGTGATCTTAACTCTTCGGACATGTTATCATTGAAGAGTGAGATGATTCATCATGTTTCAATTGGAAGATTCTCTCCCTCTAATGAAACTTTTTGTGGAAATCCGAGCCTTTCCTCTATTTTCAACGAGGATGAAAGTTCATTTACGTTATTGAATATAGCTCAGAAGAGATCTATGTCTGATATTGCTCATATTCCAAGGTTGATAGAAACATGCAAGCAGAATAGAATGGAACAAGGTGAGGCATCAAGTGGGAATAACGAGAGGGAAGAGAGGATGAGAAGGATTTGGTTGACAATTGCTCAACGAACAGTGCAATGGTTTGCAGGACAAGAAAGAAATTCAACAGATTTAGAGATAAAACATTTAGCTTCGGATGTTTGA 1200 0.3967 MIKIFMNMAFKNHLLVFIMTVLFFISNVQAQNNDTDSMQDLPQPVRPSKMVVVLALSILFTISFLLLVYIRFRRSIPLELTNRRSPDSPNFQAQTQSRSRHSGIDRKVIEALPFFMFSSLKGSKQGLECTVCLSQFEDTEILRLLPKCKHAFHMNCIDKWLESHSTCPLCRNNIDPLDIKNFTYSISSRSLRVPSNLTDDTNLEIFVHREPSSHQGSSSSSRFNIGSMFWNLGWSNKKKLLVDQEVCGTNGTHVHKFYHKIVVSDVVRRSRWSDLNSSDMLSLKSEMIHHVSIGRFSPSNETFCGNPSLSSIFNEDESSFTLLNIAQKRSMSDIAHIPRLIETCKQNRMEQGEASSGNNEREERMRRIWLTIAQRTVQWFAGQERNSTDLEIKHLASDV 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00093 399 CDD RING-H2_EL5-like 128 171 - -
Vian7g00093 399 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 30 385 - -
Vian7g00093 399 SUPERFAMILY RING/U-box 110 177 - -
Vian7g00093 399 SMART ring_2 129 170 IPR001841 -
Vian7g00093 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 178 IPR013083 -
Vian7g00093 399 FunFam RING-H2 finger protein ATL43 104 178 - -
Vian7g00093 399 Pfam Ring finger domain 128 171 IPR001841 -
Vian7g00093 399 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00093 Vian-Chr7 3949133 3950332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00093 34 390 C3H Transcription Factor Family AT2G20030 40.365 9.73e-74 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00093 K10664 - gmx:100803881 560.451