Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00080 ATGATATCTTGCGGGGAGGATGTCCCCTCACAGGGTCTAAAATCATCAGATATTAATATACTTCAAAATGAACAGCTTCTGAGTGAGGTATTCTACGAGTGCAAAAAAGATCTCTTAGAAAAGACAGTGATAGAGTCACCACTCAATGATATTATGGAAATCAAGGTTCCACCACTGAACATTGAGGATAATTCAATTGAAGTAAACAAATCACTTCTTCACACTACTCTACCAAAGAGCATCAGTTCAGGAAGTCTGAGTTCAATGGACTGGATGCATGGAGCTGCAATGAAGCCAACTTTTCTGGATTTTCCAGGATTAGATTTCAATGCAGTTTATGGCATGCGGAGAGCATTTAGCGAAGGAGATATAAAGACTCTTAATACTGGCAACACGAGCTTATGCCAATCTCCACAGGAGAGACCTTTGTTTCTTGGCAACTGCACTAGTGAAGAACGTCAAGAAAAGCTCTCCAGATACAGAAACAAGAAGACAAAGAGAAATTTTGGGAGGAAAATTAAGTATGCTTGCAGGAAGGCACTTGCTGACAGTCAACCAAGAATCCGTGGAAGATTTGCAAAGACAGAAGAGTTAGATGTGAAGAGGTAA 609 0.4023 MISCGEDVPSQGLKSSDINILQNEQLLSEVFYECKKDLLEKTVIESPLNDIMEIKVPPLNIEDNSIEVNKSLLHTTLPKSISSGSLSSMDWMHGAAMKPTFLDFPGLDFNAVYGMRRAFSEGDIKTLNTGNTSLCQSPQERPLFLGNCTSEERQEKLSRYRNKKTKRNFGRKIKYACRKALADSQPRIRGRFAKTEELDVKR 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00080 202 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515
Vian7g00080 202 Pfam CCT motif 153 195 IPR010402 GO:0005515
Vian7g00080 202 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 79 195 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00080 Vian-Chr7 3299609 3300697 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00080 149 194 C2C2-CO-like Transcription Factor Family AT5G24930 54.348 4.33e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian7g00080 CCT 1e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00080 - - aprc:113853022 323.168