Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00064 ATGGAATTCGACGAGCAAGAGGAGCAGGAGGAGGAAATGGGGATGCCGGACCCGCCGGTGCCAGCGCCGGTCGCAAGTTACGACTCGCTTGGAAACTCCGCGGCTCGCTCCAAAGTCGGCGCCGAGGGACGGAAGGGCGCGTTCGGCGCCGCCGCGGTACGATACCGAGAATGCCAGAAGAACCACGCCGTGAGCTTCGGCGGCCACGCTGTCGACGGATGCTGCGAGTTCATGCCGGCCGGCGAGGACGGCACTCTGGAGGCCGTGATTTGCGCTGCCTGCAACTGCCACCGGAATTTTCACCGCAAGGAGATCGACGGCGAGATGACCTCCTTTCACCACCGAGCGCAGCCACCGCCGCCTCTGCACCACCACCATCAGTTCTCCCCGTACTACCACCACCGAGTCCCGCAGCACCCCGGCGCCGGCGGCTACCTTCACCACCACCTCGCCACACCTCCAATGGCGCAGCACCGCCCGCTCGCCCTCCCGGCAGCGGCCTCCGGCGGAGGACTCAGCCGCGAAGACGAAGACATCTCGAATCCGAGCAGCAGCGGCGGCGGAGGTGGCGGAGGATCCAAAAAACGGTTCCGAACGAAGTTCACGCAGGAACAGAAGGATAAGATGCTGGCATTCGCGGAACAGGTGGGGTGGAGAATCCAGAAGCACGATGAATCTGCTGTGGAACAGTTCTGTGCCGAGACCAATGTGGAGAGAAAAGTTCTCAAAGTTTGGATGCACAATAACAAGAACACTCTCGGTAAGAAACCCTAA 774 0.6214 MEFDEQEEQEEEMGMPDPPVPAPVASYDSLGNSAARSKVGAEGRKGAFGAAAVRYRECQKNHAVSFGGHAVDGCCEFMPAGEDGTLEAVICAACNCHRNFHRKEIDGEMTSFHHRAQPPPPLHHHHQFSPYYHHRVPQHPGAGGYLHHHLATPPMAQHRPLALPAAASGGGLSREDEDISNPSSSGGGGGGGSKKRFRTKFTQEQKDKMLAFAEQVGWRIQKHDESAVEQFCAETNVERKVLKVWMHNNKNTLGKKP 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00064 257 FunFam Zinc-finger homeodomain protein 2 181 255 - -
Vian7g00064 257 Pfam ZF-HD protein dimerisation region 53 105 IPR006456 -
Vian7g00064 257 Gene3D - 179 254 - -
Vian7g00064 257 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 37 253 - -
Vian7g00064 257 MobiDBLite consensus disorder prediction 1 29 - -
Vian7g00064 257 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 55 104 IPR006456 -
Vian7g00064 257 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 54 105 IPR006456 -
Vian7g00064 257 MobiDBLite consensus disorder prediction 165 196 - -
Vian7g00064 257 NCBIfam homeobox domain, ZF-HD class 194 251 IPR006455 -
Vian7g00064 257 SUPERFAMILY Homeodomain-like 180 255 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00064 Vian-Chr7 2642132 2642905 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00064 1 253 ZF-HD Transcription Factor Family AT4G24660 52.964 1.14e-74 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vian7g00064 ZF-HD_dimer 2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00064 - - gmx:100776421 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00064 7 2642132 2642905 Vian7g00064 7 2642132 2642905 ECH
Vian7g00064 7 2642132 2642905 Vian4g01719 4 33276840 33278016 PCT