Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00058 ATGCGATCACCGAATGAAATGAAAAAGAAACGAAAAGAAAGCGAGGCCAGTGAGCGGTCGAACTGGCCGGAGGTTTCGAGGTCGCATTACTCGCTGGAGCGTGGTTCGAGGTTTAACAAACGGTGCAGGGAAGACGGCGTGGCCACGGTTCCCACTCGCGGCGCGTCGTCACTTTTGACTGCGGCGCGGGGATTGAAGCGGAAGATAGGGTGCATTGACGATGCCACGCGGATGGGGAGGAGCGTGAGGATCGAGGACGATTACGTGATCGGAGGGAGCACGATCGGGCAGGGGAAGTTTGGGTCGGTGACGATTTGCCGCGCACGTGCGGGGGGCGTGGAGTACGCGTGCAAGACGCTCAGGAAGGGGGAGGAGACGGTGCACCGCGAGGTGGAGATAATGCAGCACGTGTCGGGGCACCCTGGGGTTGTAACTCTTAAAGCGGTGTATGAGGATGCGGAGTGTTGGCACCTTGTGATGGAGCTGTGCTCCGGGGGAAGGTTGGTTGATAAGATGAGGGAGGGGCCGTGTTCGGAACACGTTGCCGCTTGGATACTGAAGGAGGTAATGATGGTGGTTAAGTATTGTCATGATATGGGCGTGGTCCATAGGGATATTAAGCCTGAGAATGTTCTCATTACTGGAACTGGGATGATAAAGCTCGCTGATTTTGGCCTCGCCATCCGAATTTGTGAGGGTCAGAATTTGAAAGGTGTGGCTGGGAGCCCTGCATATGTTGCACCAGAAGTGTTGTTGGGTAGATATTCTGAGAAGGTGGATATATGGAGTTCTGGGGTGCTCCTGCATGCTTTGTTGGTTGGTTTTCTTCCATTTAAAGGCGACTCACAGGATGCAGTTTTTGAGGAAATAAAAAATTTCAAACTAGATTTCCAAACGGGGGTGTGGGAATCGATATCTAAACCTGCTCGAGATCTTGTTGGGAGAATGTTGACTAGGGATGTTTCAGCAAGGATAACAGCCGATGAAGTACTGAGTCATCCATGGATATTGTTCTATACGGCGCAAACATTGAACACGCTGCCCGTTAAATCAAAATTGAAACCCCAAAATGCTGCTACTTGCCACAAGTTTGTTACTGCACCTGAATCTGGGTTTGGAGGAAACAGGATGGATGATTGTTCCCTAAATGGTTCAAGCTCGTTTTCATCCTCTGAAAGTGGCAATTCAGAATATGATGATGACTGTGAGTGGATTGATGCCCTTACCACTGCGGTTTCACATGTGACGATATCCGAAGCTAAGAGGACCAAGCTGTGGGGTCCCACTGGTCCATTTGATTCACAAGGTTCATCTAACTTGAAGACTAACCTCTGTAAAGCATTCTGA 1347 0.5041 MRSPNEMKKKRKESEASERSNWPEVSRSHYSLERGSRFNKRCREDGVATVPTRGASSLLTAARGLKRKIGCIDDATRMGRSVRIEDDYVIGGSTIGQGKFGSVTICRARAGGVEYACKTLRKGEETVHREVEIMQHVSGHPGVVTLKAVYEDAECWHLVMELCSGGRLVDKMREGPCSEHVAAWILKEVMMVVKYCHDMGVVHRDIKPENVLITGTGMIKLADFGLAIRICEGQNLKGVAGSPAYVAPEVLLGRYSEKVDIWSSGVLLHALLVGFLPFKGDSQDAVFEEIKNFKLDFQTGVWESISKPARDLVGRMLTRDVSARITADEVLSHPWILFYTAQTLNTLPVKSKLKPQNAATCHKFVTAPESGFGGNRMDDCSLNGSSSFSSSESGNSEYDDDCEWIDALTTAVSHVTISEAKRTKLWGPTGPFDSQGSSNLKTNLCKAF 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00058 448 CDD STKc_CAMK 87 335 - -
Vian7g00058 448 Gene3D Transferase(Phosphotransferase) domain 1 169 367 - -
Vian7g00058 448 SUPERFAMILY Protein kinase-like (PK-like) 83 368 IPR011009 -
Vian7g00058 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Vian7g00058 448 ProSitePatterns Protein kinases ATP-binding region signature. 95 118 IPR017441 GO:0005524
Vian7g00058 448 Gene3D Phosphorylase Kinase; domain 1 91 168 - -
Vian7g00058 448 Pfam Protein kinase domain 93 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00058 448 MobiDBLite consensus disorder prediction 1 29 - -
Vian7g00058 448 SMART serkin_6 89 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00058 448 PANTHER SERINE/THREONINE-PROTEIN KINASE 75 360 - -
Vian7g00058 448 MobiDBLite consensus disorder prediction 1 22 - -
Vian7g00058 448 ProSiteProfiles Protein kinase domain profile. 89 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00058 448 FunFam Maternal embryonic leucine zipper kinase 86 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00058 Vian-Chr7 2462939 2466009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00058 92 336 EF-hand Containing Proteins AT4G04720 45.312 5.18e-74 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vian7g00058 Pkinase 4.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00058 - - gmx:100809977 695.656