Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00047 ATGAGCATGCAAAAAGAGAGTCCTCTCATTAGACTCCACAGTTTCGACCAAGGCCATGCATGGCTCGCTCTCTTGCACCTCCTCATTCACATGTCACCGCCAGTAACCGGTCAACCGGTAAATCCGGCAATAGAACCCGACAGCAACAAATCCGTGATCGTCATCATGGTCATCATCGCCATAATGTTCCTCATCTCAGCCTTAATCTCTCTCTACTCTCGCAAATGCTCCGACCGACAAGCGCTGGCACGTGCCACACTCGACCTCGCCGCATCCACTGGCGCAACCGGTAACCCGTCGTCGCAAAGCGAACCCAGTGGTCTCAGCCAGGCCACCATAGAAACCTTCCCCACATTCCTCTACTCCGACGTGAAGAGTTTCAAAATCGGAAAAGACACTTTAGCATGCGCTGTGTGCTTGAGCGAGTTCCAAGACCACGATACCCTTCGCATGATCCCCAAATGTTGCCACGTGTACCACCCCAATTGCATCGACGTGTGGTTAGCTTCTCACACCACTTGTCCAGTGTGTCGCGCCAACCTCGTTCCAGAACCTGAAGACTTAGACACGAACACGAACATGATACCCATGTTGTCCATTCAGGTACCCGATGAACATGAAGATGAAGACGAAAGTGGTGAACATGAACACGAGAGTGTTATCAGTGAGGAAGGGAAAAGAGGGCATGCTGAAGTGGAGTCACCGAAGGTGGATTTGCTTCGGAGGATTCACTCGTTGCATCAGAGTCGTCCATCACGGTCGAGATCCACTGGGTTCTTATCCTCTCTCTTGTTTCCGCGATCGAACTCAATGGGGCAATTGGCGCAGCCAGGGGAGAACTATGAGAGGTTTACGCTAAGGTTACCGGAGGAGGTACAAAGCCAGATGATGAACTCGAGACTTAAGCGTGCGAATAGTTGTGCATGCTTTACAAGAATGAACAGTGGCACGTGGGGGTATAGAACGAGAAGCGTGGGAAGTGGACGTGGAAGAGGTTGTGTGCAGTACGAGAGGTTCAATGGTGAGGAACAATGGGGTTTCACTTTGACCTCACCGAACCTCGTTAAAAACGAAGAGAAGTTAGGTTATGATACATGGGCGAATGCGAGGGAAGGAGTGAGAGTGGCGAAGAACGAACCAGAAGTAGAAGCAATTGACGACTTAGAGGAGAGGCAGAAGAGCGAAGCTGAAACTGTAAAACCTCCGTGCTTAGATGTTGATGATGGCTTGTCCTGGTTCTCGCATGGTTTCATTGATTTAGATTTGTATTTGGTGATGAAGCGCAATGCATTCGTTCGCGATAATGGTTTTGATGGTGGGAACAAAGCTACTCTATGA 1338 0.4985 MSMQKESPLIRLHSFDQGHAWLALLHLLIHMSPPVTGQPVNPAIEPDSNKSVIVIMVIIAIMFLISALISLYSRKCSDRQALARATLDLAASTGATGNPSSQSEPSGLSQATIETFPTFLYSDVKSFKIGKDTLACAVCLSEFQDHDTLRMIPKCCHVYHPNCIDVWLASHTTCPVCRANLVPEPEDLDTNTNMIPMLSIQVPDEHEDEDESGEHEHESVISEEGKRGHAEVESPKVDLLRRIHSLHQSRPSRSRSTGFLSSLLFPRSNSMGQLAQPGENYERFTLRLPEEVQSQMMNSRLKRANSCACFTRMNSGTWGYRTRSVGSGRGRGCVQYERFNGEEQWGFTLTSPNLVKNEEKLGYDTWANAREGVRVAKNEPEVEAIDDLEERQKSEAETVKPPCLDVDDGLSWFSHGFIDLDLYLVMKRNAFVRDNGFDGGNKATL 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00047 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 183 IPR013083 -
Vian7g00047 445 PANTHER RING FINGER DOMAIN-CONTAINING 39 187 - -
Vian7g00047 445 Pfam Ring finger domain 135 178 IPR001841 -
Vian7g00047 445 CDD RING-H2_EL5-like 136 178 - -
Vian7g00047 445 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Vian7g00047 445 MobiDBLite consensus disorder prediction 213 234 - -
Vian7g00047 445 SMART ring_2 136 177 IPR001841 -
Vian7g00047 445 FunFam E3 ubiquitin-protein ligase ATL6 97 184 - -
Vian7g00047 445 SUPERFAMILY RING/U-box 130 186 - -
Vian7g00047 445 MobiDBLite consensus disorder prediction 203 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00047 Vian-Chr7 2065283 2070114 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00047 49 299 Rapid Response to Elicitors AT2G35000 37.452 2.65e-47 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00047 K10664 - gmx:100814384 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00047 7 2065283 2070114 Vian7g00047 7 2065283 2070114 ECH
Vian7g00047 7 2065283 2070114 Vian4g01680 4 32811748 32812830 PCT