Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00045 ATGGCCAAAAAACTCAGAAAACTCTTCCCAGATGAAACAACAACCTCAAACCAAACCCAAACACAAGATTGCTATGGCTTATGTGACCCTGTTTGCCCTTACAACTGTTACACTAACCAAGACTACTTCTTATCTCCACCACCACCATTTGTTTCACCTTCAACACAAGTTAACCACATATCCTCCTATTTGATCATCCTCGGTACTCTCTTCGCTGTCATTTTTGTTGTCATAGGTTTCTACGTGATCAAACTGAAGTGCTATGCTGCATGGTGTGGGTGGAGGCTCAACGGATCCCTTCCTTCTCAATCAGACACCACCACGGAGGAGTTTCTCCATGAGAACCAAGTTGACCACCCCGTGTGGCTCATTGCCACGGTGGGGTTGCAACAATCCGTCATAAACTCCATCACGGTGTGCAAGTACAAAAGCAACGAAGGGTTGGTTGAAGGAACCGAGTGTTCGGTGTGTTTGAACGAGTTCCAAGAGGAAGAGACCTTGAGACTCTTGCCAAAGTGCAACCATGCTTTTCACATCCCTTGTATCGACACTTGGTTGAGATCACACACCAATTGTCCTCTTTGTCGTGCAGGTATTCTCTCTAACAGTGTTACTTCTGAAGCACCCGTGTCCAATTTGGAGCAAGAGAATGCGAATTTGGGAAGAAATCAAGACACCCTTATGGAAAATTCAAGGAATGAAGGCTTGTTAAACAGCAGCACCGTTGCAGGGGAATCAAGTGAAGCACTAGAGTTGGTTGATGAATCAAATTCTAAGGATCGGGTGCATGACCAAACTCAGAACCATCACGTTCTGGATATTGAGATTCACACCGAAATGCGGTCTGTTTCAACCACAGAATCTGAAATCCATCATGTTTTTGATGATCATAAGCACGATGAAACACACTTGCAAGCTGTTAATCGACGGAAGCAAGAGCAAGATGTTGATTACCACCCAAAAACGTGTAAAACAATGCGTCGTTGTTCCTCTATTGAAGAGTGTTTACATTTAAGCCCGGTATCCATGAAAAGATCATTCTCCTGCAATGGAAGGATTCTAACTTCCAGAGGTTGCATGACTCTAAACCCTATGCTCCATTCATCCCTGTTAGAATTTTCAATCTGTTAG 1131 0.4394 MAKKLRKLFPDETTTSNQTQTQDCYGLCDPVCPYNCYTNQDYFLSPPPPFVSPSTQVNHISSYLIILGTLFAVIFVVIGFYVIKLKCYAAWCGWRLNGSLPSQSDTTTEEFLHENQVDHPVWLIATVGLQQSVINSITVCKYKSNEGLVEGTECSVCLNEFQEEETLRLLPKCNHAFHIPCIDTWLRSHTNCPLCRAGILSNSVTSEAPVSNLEQENANLGRNQDTLMENSRNEGLLNSSTVAGESSEALELVDESNSKDRVHDQTQNHHVLDIEIHTEMRSVSTTESEIHHVFDDHKHDETHLQAVNRRKQEQDVDYHPKTCKTMRRCSSIEECLHLSPVSMKRSFSCNGRILTSRGCMTLNPMLHSSLLEFSIC 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00045 376 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Vian7g00045 376 Pfam Ring finger domain 153 196 IPR001841 -
Vian7g00045 376 Coils Coil 210 230 - -
Vian7g00045 376 CDD RING-H2_EL5-like 153 196 - -
Vian7g00045 376 FunFam RING-H2 finger protein ATL54 129 202 - -
Vian7g00045 376 PANTHER RING-H2 FINGER PROTEIN ATL16 46 336 IPR044600 GO:0016567|GO:0016740
Vian7g00045 376 SMART ring_2 154 195 IPR001841 -
Vian7g00045 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 204 IPR013083 -
Vian7g00045 376 SUPERFAMILY RING/U-box 144 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00045 Vian-Chr7 1969665 1970795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00045 3 206 C3H Transcription Factor Family AT1G72220 46.983 1.28e-61 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00045 - - gmx:100805705 558.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00045 7 1969665 1970795 Vian7g00045 7 1969665 1970795 ECH