Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00021 ATGATTGGAAGCTATGGTCTACCATTATTCTTGCTAGTCAGGATTTTGTTTGGGGTGACATTACTTATTGCGCTTCTGATATACAAATGGCGTAAAAGGCATCTGTCAATGTATCAAAATATTGAAAATTATCTAGAACACAATAACTTGATGCCTATTAGATACTCATATAAGGAAATCAAGAAGATGGTTAAAGCTTTCAAAGAAAAATTGGGTGAAGGAGGTTATGGCTCAGTGTTCAAGGGAAAGCTCTCTTGTGGAACTTGCGTGGCAATAAAAATGATGGATAAATCAAAAGGTAATGGACATGATTTTATAAGTGAAGTTGCAACTATTGGAAGAATTCATCATCAAAACGTGGTACAATTAATTGGATTTTGTGTCGAAGGTTCAAGACGTGCTCTTGTTTATGAATTCATGTCCAATGGATCTCTTGATAAAATTATTTTTTCAAAAGATAAAACTATAGATTTTGATTATAACAAAATATATCATATATCAATCGGGATAGCTCGTGGGATTGCTTATCTCCACCATGGATGTGAGATGCAAATTCTGCATTTTGATATAAAGCCCCACAATATTCTACTAGATGACAATTTCATTCCAAAGGTCTCTGATTTTGGATTGGCTAAACTATATCCGGTAGATAATAGCATTGACACCATGACAGCAGTGGGAGGAACAATTGGATATATGGCTCCAGAATTGTTTTATAAAAACATTGGAAGAATATCCCATAAGTCTGATGTTTATAGTTTTGGGATGCTTTTGATGGAAATGGCAAGCAGAAGGAAAAACTTAAATTCCCATGCCGAGCATTCAAGTCAAATTTTCTTTCCTTCTTGGGTTTATGAAAACATAAGAGAAGAGAAGGATATAGAAATGGAAGATATCACAAAGGAGGAAAAGAAAATAGCAAAGAAAATGATCATAGTTGCACTTTGGTGTATACAAATGAATCCAAATGATCGTCCCTCCATGAACAAAGTGGTAGAAATGCTTGAAGAAAAGATGGAAAACTTGGAAATCCCTCCAAATTTTTCTTTATATCCATATGAAGCTAGTGAATACTCCAAACAAACAATTGTAAGTGAATTTGTTAGTTCTTCTAGTTATTCTACGAAAATTTCTATAAATCCTACAATAAAGAATAGTAGTTGA 1164 0.3351 MIGSYGLPLFLLVRILFGVTLLIALLIYKWRKRHLSMYQNIENYLEHNNLMPIRYSYKEIKKMVKAFKEKLGEGGYGSVFKGKLSCGTCVAIKMMDKSKGNGHDFISEVATIGRIHHQNVVQLIGFCVEGSRRALVYEFMSNGSLDKIIFSKDKTIDFDYNKIYHISIGIARGIAYLHHGCEMQILHFDIKPHNILLDDNFIPKVSDFGLAKLYPVDNSIDTMTAVGGTIGYMAPELFYKNIGRISHKSDVYSFGMLLMEMASRRKNLNSHAEHSSQIFFPSWVYENIREEKDIEMEDITKEEKKIAKKMIIVALWCIQMNPNDRPSMNKVVEMLEEKMENLEIPPNFSLYPYEASEYSKQTIVSEFVSSSSYSTKISINPTIKNSS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00021 387 ProSitePatterns Protein kinases ATP-binding region signature. 71 93 IPR017441 GO:0005524
Vian7g00021 387 Coils Coil 285 305 - -
Vian7g00021 387 SUPERFAMILY Protein kinase-like (PK-like) 50 337 IPR011009 -
Vian7g00021 387 SMART serkin_6 65 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00021 387 Gene3D Phosphorylase Kinase; domain 1 38 139 - -
Vian7g00021 387 PANTHER RUST RESISTANCE KINASE LR10-RELATED 38 355 IPR045874 GO:0004672
Vian7g00021 387 Gene3D Transferase(Phosphotransferase) domain 1 140 354 - -
Vian7g00021 387 FunFam PR5-like receptor kinase 140 346 - -
Vian7g00021 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Vian7g00021 387 Pfam Protein kinase domain 68 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00021 387 ProSiteProfiles Protein kinase domain profile. 65 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00021 387 FunFam serine/threonine-protein kinase PBS1-like 34 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00021 Vian-Chr7 1103345 1104508 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00021 2 382 Receptor kinase-like Gene Family AT5G38260 43.990 1.52e-110 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vian7g00021 Pkinase 6.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00021 - - vun:114195039 644.81