Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00019 ATGGCAAAGTCCAGCACACTGTCTCTCCATGGCTATGGTATATTGATCACACTAATGCTATTCCATAAGCTCATTCCTATCAAAGGTAGCAGCTATCATGACGACTGCGGGGAATTGTCTTGTGGGCCAAATCAACCACCTATTAGATTTCCCTTCCAACTTGTCAAGGGGATACATGAATGTGCTCATCGTGGGTATTGTCTGTATTGTACTCAAGAAAACAACACCATGCTTTTCCTCCCTACCATAAAACTCCAGGTCGAATACATAGACTACCAAACGTTGCAAATTTACTTGAAGGATCCGAACAATTGCCTTCCAAAAACTCTTCTAAATCATTACAATCCTTTTAATGATCATTACTTTACCGTATCAAGCAGCTTGAGCTTCTTTGACTGTTCTTCAGTTGGGTATAGACAACTCAGAAATTCATATGGATCGTACCAAGATATGATCTCCTGTCCGATTTACGTCACTGATTCTCAGGCAAGTGTCTTGGAATGGGACCTGACATTCTGTTCAAAGATGTTTGACGTCACTGCACCTGTTTCGGCATTCGACATGCTGCAGAATAAGTTAACATTGACATGGTCCAAACCAGCTTGTACTGCGTGCGAAGCGCAAGGCAAAAGATGTAAATGGAAGAACAACAGCACCGAAGTTATCGAATGTTTTGATTGCTATAACGAAAGGGGCCTCCAGAAAAGAATCACGGATTTCAGATCTTTTATTGTTTCTACTACAGTTATCGTAGGTTCAGTTCTTTTGGGCCTGCTGGTCATTGTGGCTTTTAAGAGTTTCCGTTATTTTAGAAAGAAGGAAGAAGACCAAGCAAGAGTGGACAAGTTCTTAGAGGATTACAGAGCAGAAAAGCCTACAAGGTTTACGTACGCAGATGTCAAGAGAATCACCGGTGGTTTTAAAGAAAAACTAGGGGAAGGAGCTCACGGAGCTGTTTTCAGAGGAAAACTTTCGAATGAGATTCTCGTGGCTGTGAAGATCATCAATAATAGTGACGGAGATGGGAATGAGTTCATCAATGAAGTTGGAATTATGGGAAAAATCCACCACATCAACGTGATTCGTTTGTTAGGCTTTTGCGCCGAAGGAATCCATCGTGCTCTTGTCTACAATTTGTTTCCAAAGGGTTCGCTACAAAGCTTCATATTTCCACCCGATGACAAGGACCATTTCCTTGGCTGGGAGAAGATGCAACACATTGCTCTTGGTATAGCTAAAGGGATTGAGTATCTCCATCAAGGTTGTAATAATCCCATTGTTCACTTTGACATAAATCCTCGCAATGTGTTGCTTGATGACAACTTCACTCCAAAGATTTCTGATTTTGGATTAGCCAAATTGTGTTCCAAGAATCCAAGTTTGGTGTCCATGACAGCTGCTAGGGGAACCTTGGGATACATTGCACCGGAAGTTTTCTCCAGGAACTTCGGAAATGTGTCTTACAAGTCAGATATTTACAGTTATGGAATGTTGTTGCTGGAAATGGTTGGAGGAAGGAAGAATGTAGACATGTCATCCCCGCAAAATATCCATGTTCTATATCCAGATTGGATCCATAATCTGGTTGATGGAGACATACATATCCAAGTTGAGGATGAAGACCATGTTAAAATTGCGAAGAAGCTAGCTATTGTTGGACTTTGGTGCATTCAGTGGCAGCCAGTGAACCGCCCATCCATGAAATCTGTTATACAAATGCTAGAAACTAAAGAGGTAGACCAGTTAACTGTGCCTCCTAATCCATTTCACTCAACCAATTCAACTACTGCCAGTCTCAATTCAACAAGAAGACCTTTGGAGTTGGAAGCAATTCAAGAGTAA 1842 0.4148 MAKSSTLSLHGYGILITLMLFHKLIPIKGSSYHDDCGELSCGPNQPPIRFPFQLVKGIHECAHRGYCLYCTQENNTMLFLPTIKLQVEYIDYQTLQIYLKDPNNCLPKTLLNHYNPFNDHYFTVSSSLSFFDCSSVGYRQLRNSYGSYQDMISCPIYVTDSQASVLEWDLTFCSKMFDVTAPVSAFDMLQNKLTLTWSKPACTACEAQGKRCKWKNNSTEVIECFDCYNERGLQKRITDFRSFIVSTTVIVGSVLLGLLVIVAFKSFRYFRKKEEDQARVDKFLEDYRAEKPTRFTYADVKRITGGFKEKLGEGAHGAVFRGKLSNEILVAVKIINNSDGDGNEFINEVGIMGKIHHINVIRLLGFCAEGIHRALVYNLFPKGSLQSFIFPPDDKDHFLGWEKMQHIALGIAKGIEYLHQGCNNPIVHFDINPRNVLLDDNFTPKISDFGLAKLCSKNPSLVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNVDMSSPQNIHVLYPDWIHNLVDGDIHIQVEDEDHVKIAKKLAIVGLWCIQWQPVNRPSMKSVIQMLETKEVDQLTVPPNPFHSTNSTTASLNSTRRPLELEAIQE 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00019 613 Pfam Wall-associated receptor kinase galacturonan-binding 36 101 IPR025287 GO:0030247
Vian7g00019 613 ProSiteProfiles Protein kinase domain profile. 305 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00019 613 MobiDBLite consensus disorder prediction 583 605 - -
Vian7g00019 613 SUPERFAMILY Protein kinase-like (PK-like) 289 578 IPR011009 -
Vian7g00019 613 FunFam serine/threonine-protein kinase PBS1-like 271 379 - -
Vian7g00019 613 Gene3D Transferase(Phosphotransferase) domain 1 380 585 - -
Vian7g00019 613 Pfam Protein tyrosine and serine/threonine kinase 307 574 IPR001245 GO:0004672|GO:0006468
Vian7g00019 613 PANTHER RUST RESISTANCE KINASE LR10-RELATED 277 594 IPR045874 GO:0004672
Vian7g00019 613 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Vian7g00019 613 FunFam PR5-like receptor kinase 380 585 - -
Vian7g00019 613 MobiDBLite consensus disorder prediction 585 605 - -
Vian7g00019 613 Gene3D Phosphorylase Kinase; domain 1 278 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00019 Vian-Chr7 1061341 1063258 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00019 12 588 Receptor kinase-like Gene Family AT1G66910 33.124 1.52e-99 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vian7g00019 PK_Tyr_Ser-Thr 1.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00019 - - gmx:102662104 852.818