Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00015 ATGAAAGTTAACTTGACAGGATTATTCAATAGAATAACAAATGGCCAAGGATCAAATGATGTGGGAGAATTGATAGGTCAATATATTCTACCAATATTAATTGCAACTAGATATTTGTTTGGACTCTCACTTTTTCTATGGATATTCATCCATAAATGGCGACGTAGACATTTTTCAGTGTATGAAAACATTGAAAATTTTTTGCTAGACAACAATATAAATCCCATTAGATATGAGTACAGAGAAGTGAAGAAAATGACTAAAGGTTTCAAAGTGAAATTAGGAGAAGGAGGTTTTGGTTCTGTTTACAAAGGAAAGCTTCAAAGTGGGTTAGATGTAGCAGTAAAGATGTTGAGCATATCCAAAGACAATGGTCAAGACTTTGTTAATGAAGTAGCTACACTTGGGAGAATACATCATGTGAATGTAGTAGGTCTTATTGGATATTGTGTTGAAGGAAAAAAGCGTGGTCTAATCTATGAATACATGCCTAATGGGTCATTGGATAAATTTCTTTTCTCTAAAGAAGGAATTGTTCCTTTGAGTTACGAGAAGATATATGAAATATCTCTTGGAATTTCTCATGGGATAGCATATTTACATCGAGACTGTGATGTGCAGATTTTACATTTCGATATCAAGCCTCATAATATTCTTTTAGATGATAACTTTACTCCAAAGGTTTCAGATTTTGGACTTGCAAAATTGTATCCTACAAAAGACAAATCCATTATTTTGACTGCAATAAGAGGAACACTGGGTTACATGGCTCCAGAATTATTCTACAAAAATGTTGGTGGAGTTTCACATAAAGCAGATGTCTATAGTTTTGGAATGCTTTTGATGGAAATGGCAAGTAGGAGAAAAAATTCAGATCCTCATGCAGAACATTCAAGTCAAAATTATTTTCCCTTTTGGATCCATGATCAATTTACAGAAGACAAAGATATTGACATGGAAGGTGCTTCAGAAATGGATAAAATTCTCATAAGAAAAATGTTCATAGTTGCACTTTGGTGTATACAATTGAAACCATGTGATCGTCCAACAATGAGCAAGGTTGTAGAGATGATTGAAGGAAAAACTGAAAGTCTTGAAATTCCTCCAAAGCCATCCTTTTATCCTCATGAAATGTTAGAACATGGTGGTACAATTAACTCTGACGAAATATCATGGAGTGATTCAACTAGTTATAATATGAGTGTTGACAAAAACATGGCTAATCACTCATATTCAGAATAA 1242 0.3341 MKVNLTGLFNRITNGQGSNDVGELIGQYILPILIATRYLFGLSLFLWIFIHKWRRRHFSVYENIENFLLDNNINPIRYEYREVKKMTKGFKVKLGEGGFGSVYKGKLQSGLDVAVKMLSISKDNGQDFVNEVATLGRIHHVNVVGLIGYCVEGKKRGLIYEYMPNGSLDKFLFSKEGIVPLSYEKIYEISLGISHGIAYLHRDCDVQILHFDIKPHNILLDDNFTPKVSDFGLAKLYPTKDKSIILTAIRGTLGYMAPELFYKNVGGVSHKADVYSFGMLLMEMASRRKNSDPHAEHSSQNYFPFWIHDQFTEDKDIDMEGASEMDKILIRKMFIVALWCIQLKPCDRPTMSKVVEMIEGKTESLEIPPKPSFYPHEMLEHGGTINSDEISWSDSTSYNMSVDKNMANHSYSE 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00015 413 PANTHER RUST RESISTANCE KINASE LR10-RELATED 61 378 IPR045874 GO:0004672
Vian7g00015 413 ProSitePatterns Protein kinases ATP-binding region signature. 94 116 IPR017441 GO:0005524
Vian7g00015 413 FunFam PR5-like receptor kinase 163 370 - -
Vian7g00015 413 ProSiteProfiles Protein kinase domain profile. 88 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00015 413 SMART serkin_6 88 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00015 413 CDD STKc_IRAK 94 360 - -
Vian7g00015 413 Pfam Protein kinase domain 92 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian7g00015 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Vian7g00015 413 Gene3D Transferase(Phosphotransferase) domain 1 163 367 - -
Vian7g00015 413 SUPERFAMILY Protein kinase-like (PK-like) 73 359 IPR011009 -
Vian7g00015 413 FunFam serine/threonine-protein kinase PBS1-like 60 162 - -
Vian7g00015 413 Gene3D Phosphorylase Kinase; domain 1 65 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00015 Vian-Chr7 935698 936939 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00015 70 397 Receptor kinase-like Gene Family AT5G38280 48.529 1.18e-103 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vian7g00015 Pkinase 1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian7g00015 - - var:108336466 658.677