Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian7g00011 ATGGCTTACCCACATTACCGATCACAGTTCGGAGACACCACGTTCACCAAGGTCTTCGTTGGAGGCCTAGCTTGGGAGACTCCAACCGAAGAAATGCGCAAATATTTTGAGCAGTTTGGTGAGATTCTTGAAGCTGTCATTATCACTGATAAGAACACAGGAAAATCTAAAGGCTACGGATTCGTAACATTCCGTGATCCAGAATCAGCTAGAAGGGCATGTGCTGATCCAAACCCAGTGATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTCGGAAGACCTAGACCATCACCACCAAGAGGAAGAGGTACATTCCAAGGAGGAGCACCGGGAACAGCTTCATACAGTGGTGTGCCGGCGGCAGGAGGACCGGCACTAGCACCGCCGCCGCCGCCACCACCACCACCGCTGGTGTACCCGCCATATGGCTACCCTACCTACACCCCTGATTATGGGTACCATCAAGCCACAATGTATAACCCACAAATTCAGCAACCACAATACTACCAACAACTCTATGGACCATCCTCCTCCACCATGGGTTCCCCATATTACTATGGCTATTCTGTGCAAGCACCAAGAAGTACCTTTTCCACACCCCAACCACATCGCATACCAGCTGGACCCTCTTATCTATACTACCCTACACCAATGGAACCCTCATTTTCTGCATATCGTCCACCACCTCAGTTGCAACAACTTCCAATAAGGCAACCCCCTCCTTCCCCTACTGACTCACAGACTCAGCAACGTACCACGTCCGAGGCAGCAGGTGGAGTAGTTATAACTTCAGAAAGTTCAAATAGCCAAGGGAGGAACTGA 828 0.4976 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGEILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRGTFQGGAPGTASYSGVPAAGGPALAPPPPPPPPPLVYPPYGYPTYTPDYGYHQATMYNPQIQQPQYYQQLYGPSSSTMGSPYYYGYSVQAPRSTFSTPQPHRIPAGPSYLYYPTPMEPSFSAYRPPPQLQQLPIRQPPPSPTDSQTQQRTTSEAAGGVVITSESSNSQGRN 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian7g00011 275 Gene3D - 3 111 IPR012677 -
Vian7g00011 275 MobiDBLite consensus disorder prediction 222 275 - -
Vian7g00011 275 PANTHER BOULE-RELATED 6 254 - -
Vian7g00011 275 SMART rrm1_1 17 89 IPR000504 GO:0003723
Vian7g00011 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Vian7g00011 275 SUPERFAMILY RNA-binding domain, RBD 9 119 IPR035979 GO:0003676
Vian7g00011 275 MobiDBLite consensus disorder prediction 91 136 - -
Vian7g00011 275 MobiDBLite consensus disorder prediction 245 275 - -
Vian7g00011 275 FunFam RNA-binding protein 24-B isoform X1 3 112 - -
Vian7g00011 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Vian7g00011 275 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian7g00011 Vian-Chr7 747378 751778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian7g00011 12 92 C2H2 Transcription Factor Family AT2G19380 40.741 1.44e-15 74.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g00011 7 747378 751778 Vian7g00011 7 747378 751778 ECH
Vian7g00011 7 747378 751778 Vian4g01658 4 32546369 32551572 PCT