Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g02116 ATGGCTTCCGCTGCGCCAGGTTCAACCAATGATGCTTTATACAAGGAATTGTGGCATGCCTGTGCTGGACCCCTTGTCACCCTTCCGCGTGAAGGGGTGAGAGTTTATTACTTCCCCCAAGGTCATATGGAACAGCTCGAGGCATCTATGAACCAGGGGTTGGAGCAGCAAATGCCTTCCTTTAATCTGCCTTCTAAAATATTGTGTAAAGTGGTCAATGTTCATCTTCGAGCTGAACCTGAAACAGATGAAGTATATGCACAAATAACTTTACTTCCTGAAGCAGATCAAAGTGAGGTGACAAGCCCTGACGATCCTCTACCAGAACCTCCAAGATGTACTGTTCATTCGTTCTGCAAGACTCTCACTGCTTCTGACACTAGCACTCATGGAGGTTTCTCTGTTCTTCGAAGACATGCAGATGATTGTCTGCCACCGCTGGATATGACGCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGCAATGAATGGCATTTTAGACATATTTTTCGAGGGCAACCCAGGCGCCACTTACTGACTACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAGTTAGTGGCTGGTGATGCATTTATATTCTTAAGGGGTGAAAATGGAGAGCTGCGAGTTGGAGTTAGGAGGCTCATGAGACAGCAAGGCAACATGCCATCTTCTGTTATATCTAGTCATAGTATGCATCTGGGTGTTCTTGCCACTGCATCTCATGCCATTGCCACGGGAACCTTGTTTTCTGTATTTTACAAGCCCAGAACTAGCCGGTCTGAGTTTATTGTGAGTGTCAACAAGTATCTTGAAGCTAAAAGTCATAAACTTTCTGTTGGAATGAGATTCAAAATGAGATTTGAGGGTGATGAAGTTCCTGAAAGAAGGTTCAGTGGTACGATTGTGGGTGTTGGAGATAATAAATCGTCAGTCTGGACTAATTCTGAGTGGCGATCATTAAAGGTTCAATGGGATGAACCGTCTTCTATTTTGCGTCCTGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTGTCTACTCCTCCCACAAACTCCCAGCCTTCCCAAAGAAACAAGAGATCACGGCCTCCCATTCTTCCTTCAACATTGGCTGATTCTTCTCTGCAAGGTGTACGGAAATCACCAGTTGATTCTGCACCATTCTCTTATCGTGACCATCAACACGGAGGAGACATCTATCCACCGGCCAAATTCAATTCTACTGCAACTGGCTTCCTTGGTTTTGGTGGGAACTGTTCTGCTTCCAACAAATCAATATATTGGTCTAGTAGGACAGAAAACTCTACAGAGTCTTTTTTACCTGTAGCACTTAAAGAATCTGGAGAGAAGAGGAATGTGACTGCAAATGGGTGTAGGCTCTTTGGGATTCAGTTACTTGATAATTCTAATGGGGAAGAAAGCCTACCAATGGTCACTTTGTCAGGAAGGTTGGTTGATGATGTGCCCCTTCCATCTTTGGATGCTGAGTCTGACCAGCATTCGGAACCATCAAATATTAATCGATCCGATATTCCTTCGGTGAGTTGTGATGTTGAAAAATCATGCCTGCGGTCTCCCCATGAGTCTCAGAGCAGGCAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCAGTTGGAAGGGCGGTGGATTTAACACGGTTTGATGGATATGAGGATCTGCTAAGGAAATTGGAAGAAATGTTTGACATCAAGGATGAACTTTGTGGGTCCCCAAAAAAATGGCAGGTTGTGTACACTGATAATGAAGACGATATGATGATGGCTGGGGATGACCCATGGCTTGAGTTTTGTAGCATTGTGAGGAAAATTTTCATCTATACTGCCGAGGAGGTGAAGAAGCTTTCACCTAAAATAGGACTTCCCATCAGTGAGGAAGTTAAACCCAGCAAAATGGACTCTGAAGCAGTAGTCAATCCTGAGGACCAGTCATCTATTGTGGGGTCCGGTTGTTAA 1995 0.4466 MASAAPGSTNDALYKELWHACAGPLVTLPREGVRVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVTSPDDPLPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQGNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAKSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNKSSVWTNSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTPPTNSQPSQRNKRSRPPILPSTLADSSLQGVRKSPVDSAPFSYRDHQHGGDIYPPAKFNSTATGFLGFGGNCSASNKSIYWSSRTENSTESFLPVALKESGEKRNVTANGCRLFGIQLLDNSNGEESLPMVTLSGRLVDDVPLPSLDAESDQHSEPSNINRSDIPSVSCDVEKSCLRSPHESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIKDELCGSPKKWQVVYTDNEDDMMMAGDDPWLEFCSIVRKIFIYTAEEVKKLSPKIGLPISEEVKPSKMDSEAVVNPEDQSSIVGSGC 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g02116 664 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Vian6g02116 664 MobiDBLite consensus disorder prediction 502 517 - -
Vian6g02116 664 Pfam AUX/IAA family 538 630 IPR033389 -
Vian6g02116 664 Gene3D - 281 353 - -
Vian6g02116 664 FunFam Auxin response factor 116 220 - -
Vian6g02116 664 Pfam B3 DNA binding domain 118 218 IPR003340 GO:0003677
Vian6g02116 664 MobiDBLite consensus disorder prediction 494 517 - -
Vian6g02116 664 FunFam Auxin response factor 535 629 - -
Vian6g02116 664 SUPERFAMILY CAD & PB1 domains 541 617 - -
Vian6g02116 664 MobiDBLite consensus disorder prediction 349 385 - -
Vian6g02116 664 SUPERFAMILY DNA-binding pseudobarrel domain 107 247 IPR015300 -
Vian6g02116 664 SMART B3_2 118 220 IPR003340 GO:0003677
Vian6g02116 664 ProSiteProfiles PB1 domain profile. 540 633 IPR000270 GO:0005515
Vian6g02116 664 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 629 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vian6g02116 664 FunFam Auxin response factor 281 353 - -
Vian6g02116 664 MobiDBLite consensus disorder prediction 650 664 - -
Vian6g02116 664 Pfam Auxin response factor 244 326 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vian6g02116 664 Gene3D - 115 220 IPR015300 -
Vian6g02116 664 MobiDBLite consensus disorder prediction 346 392 - -
Vian6g02116 664 Gene3D - 535 629 - -
Vian6g02116 664 MobiDBLite consensus disorder prediction 642 664 - -
Vian6g02116 664 CDD B3_DNA 116 218 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g02116 Vian-Chr6 38081224 38088393 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g02116 2 658 B3 DNA Binding Superfamily AT1G59750 71.429 0.0 933
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vian6g02116 AUX_IAA 4.3e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g02116 K14486 - gmx:100793224 1266.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g02116 6 38081224 38088393 Vian6g02116 6 38081224 38088393 ECH