Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g02114 ATGGAAGACGGCAAGAGTATGGGTCGAAAGGAGAAGAGGAAGGCAATGAAGAAAATGAAGCGGAAGCAGACGAGGAAGGAGGCGGCGGAGAGTGAACGACGGGAGGAGGAGGACCGCCTCAACGATCCGGAGGAGCAGAGGCGGATGCAATTGCTGGAGCAGGAGGAGGCGGAGAGAATGCAGAGGGACACGATCCTCTTTCAGGAGAGGGAGAAGGCTTTCATGGATATGATAATCACCCGACAACGACAGCAGCAGCAGCAAGAACGAGACCAAGAGCAGAGCATCGACCACGACAACGAATTTGAATACGTGGTTCAGGAAGAAGGCCCTCCGGAGATTATTTGGCAAGGAAACGAGATCATCTTCAATAAGAAACAGCTCAGAGTCAGGGTTCCGGACACCGACACCCACAATAACTTTTCGCAGCAGAATGACGACATTAGACCTACATCCAATCCCTTACCCCCGGAATCGGAATCAGAATCGCGCACTCAGAACCTCCAGGACGTTGCTGAACAAATACCCAATTTCGGAACTGAACAGGATAAAGCTCATTGCCCTTTTCATCTAAAAACGGGAGCATGTCGCTTTGGTAGGCGCTGTAGTAGAGTCCATTTTATCCCTGATAAATCCTCCACTCTTCTAATGGAAAACATGTACAACGGTCCTGGCCTTGCTTGCGATCGGGACCAAGACGAGGGCCTCGAGTATACAGATGAAGAGATTGATCGCTGCTTTGAAGAATTTTATGAGGATGTCCACACAGAATTCTTGAAGTTTGGGGAAATTGTGAACTTCAAGGTGTGTAAAAATGGTTCATTTCACTTGCGAGGAAATGTGTATGTACAATACAAAGCTTTGGATTCTGCGCTGCTCGCAGCAAACTTAATAAATCGTCACGATTTTACCGGAAAACGGGTAACTTGTCAATTTGTTAACTTGACAAGATGGAAGGTTGCCATATGTGGCGAGTATATGAAATCGGGTTTCAAGACTTGTTCTCGCGGAACAGCATGCAATTTTATTCACTGTTTTCGTAATCCTGGTGGAGACTATGAATGGGCTGATTCTGACAAACCTCCCCCAAAATTTTGGGTAGAAAAGATGATTGCTTTATTTGGTTATTCTGATGATTATGAGACTTCAAGGGAGCAGGGAAATTTTAGTTTGTCAAAAACAGATTCTGACAGGTTCAGGTACCACTGTAGAAGGTCAAGATCCAGAGAGACGGATCGTTTAAGTTGTGGTCATTCTGGTAGAAGAAAACATGAAGATGAAAGAAAACAAAGAACTCCGTATGAGGATCGGAATGCTAGCTTAAAAAACACTCATAAAAGAAAATCCAGAGGCACTACTGATACTGATTCTGACAGAGAATGGTTAGAAAAGGAGGAAATTAGGGAAAGACGCCATGAATACACTAGGAATGGCTCATTTAATAAGCGCAGGGATGAAAATAGCAGAAGCCACGAAGAGGATTCTGATATGGATTGTGATACTAGGGACAATGAAAAACAGCATGGAAGAAACCCAAGAAAGTGCGACAATGACATCAGGGTCTGGATTAATGAGGCTGCTGGTTTGGATGGGGACAGAGATGTGAGAAAGCACCGTATTAGGGAAAGCTCAGGACATCAGAGTGGTGACGCTTCTGAATCCAACAAAGATTTGTTTGGTAGAGTGGAGATGGAAACACTACATGATCACTTTAGGAAAACATATAGTCACAGAAGATCGGGTGTTCAGGTGTCTGTAAAAGGAAGAGATCAAAACGACAAAGTTGATAGAGACGGGTCCCGGAAGGACAGTTACAAACGAGATCATCACAAAAGGAAGTGA 1842 0.4468 MEDGKSMGRKEKRKAMKKMKRKQTRKEAAESERREEEDRLNDPEEQRRMQLLEQEEAERMQRDTILFQEREKAFMDMIITRQRQQQQQERDQEQSIDHDNEFEYVVQEEGPPEIIWQGNEIIFNKKQLRVRVPDTDTHNNFSQQNDDIRPTSNPLPPESESESRTQNLQDVAEQIPNFGTEQDKAHCPFHLKTGACRFGRRCSRVHFIPDKSSTLLMENMYNGPGLACDRDQDEGLEYTDEEIDRCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKALDSALLAANLINRHDFTGKRVTCQFVNLTRWKVAICGEYMKSGFKTCSRGTACNFIHCFRNPGGDYEWADSDKPPPKFWVEKMIALFGYSDDYETSREQGNFSLSKTDSDRFRYHCRRSRSRETDRLSCGHSGRRKHEDERKQRTPYEDRNASLKNTHKRKSRGTTDTDSDREWLEKEEIRERRHEYTRNGSFNKRRDENSRSHEEDSDMDCDTRDNEKQHGRNPRKCDNDIRVWINEAAGLDGDRDVRKHRIRESSGHQSGDASESNKDLFGRVEMETLHDHFRKTYSHRRSGVQVSVKGRDQNDKVDRDGSRKDSYKRDHHKRK 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g02114 613 Gene3D - 212 313 IPR012677 -
Vian6g02114 613 MobiDBLite consensus disorder prediction 572 613 - -
Vian6g02114 613 Coils Coil 12 46 - -
Vian6g02114 613 SUPERFAMILY RNA-binding domain, RBD 247 315 IPR035979 GO:0003676
Vian6g02114 613 MobiDBLite consensus disorder prediction 1 61 - -
Vian6g02114 613 MobiDBLite consensus disorder prediction 478 515 - -
Vian6g02114 613 MobiDBLite consensus disorder prediction 412 460 - -
Vian6g02114 613 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 186 206 IPR000571 GO:0046872
Vian6g02114 613 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 318 345 IPR000571 GO:0046872
Vian6g02114 613 PRINTS U2 auxiliary factor small subunit signature 187 206 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vian6g02114 613 PRINTS U2 auxiliary factor small subunit signature 299 323 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vian6g02114 613 PRINTS U2 auxiliary factor small subunit signature 272 294 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vian6g02114 613 PRINTS U2 auxiliary factor small subunit signature 206 226 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vian6g02114 613 PRINTS U2 auxiliary factor small subunit signature 337 349 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vian6g02114 613 PRINTS U2 auxiliary factor small subunit signature 244 259 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vian6g02114 613 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 315 IPR000504 GO:0003723
Vian6g02114 613 FunFam Zinc finger CCCH domain-containing protein 5 214 313 - -
Vian6g02114 613 ProSiteProfiles Zinc finger C3H1-type profile. 181 209 IPR000571 GO:0046872
Vian6g02114 613 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 171 502 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vian6g02114 613 MobiDBLite consensus disorder prediction 589 605 - -
Vian6g02114 613 SMART c3hfinal6 317 346 IPR000571 GO:0046872
Vian6g02114 613 SMART c3hfinal6 182 208 IPR000571 GO:0046872
Vian6g02114 613 MobiDBLite consensus disorder prediction 135 166 - -
Vian6g02114 613 ProSiteProfiles Zinc finger C3H1-type profile. 317 347 IPR000571 GO:0046872
Vian6g02114 613 MobiDBLite consensus disorder prediction 23 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g02114 Vian-Chr6 38071058 38079159 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian6g02114 zf-CCCH 4.3e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g02114 K24273 - gmx:100789091 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g02114 6 38071058 38079159 Vian6g02114 6 38071058 38079159 ECH