Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g02110 ATGGGAAGGAAAAAGCCAGAGGATGCTGGCCCATCTGCGAAGACCAAGACAACTAAAGATGCTCCCAAGAAGGAAAAATTTTCTGTCTCTGCTATGCTGGCCAGTATGGATGAAAAGCCTGACAAACCCAAAAAGGTCTCTTCTACCTCCAGTAAGCCGAAGCCAAAATCTGCTCCAAAAGCTTCTGCATACACCGATGGTATTGATCTTCCGCCTTCTGATGATGAAGATGATGATCTCCTAGAACAGGAGGAGGAGAAAAATAATGCATCCAAACGTGGAAGTCAGCAACAAAGGCCTGATTTAAAGCCACTTGATGTGCCTATTGCTGATAAAGAGTTGAAAAAGCGTGAAAAGAAGGATCTTTTAGCAGCACATGCTGCTGAGCAGGCAAAGAGGGAGGCTCTTAAGGATGATCATGATGCATTCACTGTGGTCATTGGAAGCCGAGCTTCGGTGCTTGAAGGAGACGATGATGCTGACGCTAATGTGAAAGATATAACAATAGAAAATTTCTCTGTTTCTGCTCGTGGTAAAGAACTTTTGAAGAATGCATCAGTGAAGATATCTCATGGAAAGAGGTATGGTTTGGTTGGACCCAATGGAAAGGGCAAGTCCACACTGCTGAAACTTCTTGCCTGGAGGAAGATACCAGTACCTAAGAATATTGATGTCCTTCTGGTTGAGCAGGAGGTAGTTGGTGATGACAAGACAGCTCTTGAAGCCGTTGTTTCAGCTAATGAAGAACTAGTTAAAATTCGGCAAGAGGTTACCTCTCTTCAGAATGCAGCTTCTGCTGAAGAAAGTGTTGACAAAGATGATGATGTAGAAGATGATACAGGAGAAAAGCTAGCAGAGCTATATGAAAAATTGCAGTTGATGGGATCTGATGCTGCTGAAGCTCAGGCATCAAAGATATTAGCCGGTTTAGGTTTTACAAAGAATATGCAAGGCCGCCCTACAAAATCCTTCAGTGGTGGCTGGAGAATGAGAATTTCTTTAGCTCGAGCACTTTTTGTACAACCAACGCTATTATTACTTGATGAACCCACGAATCATCTCGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTATTTGTGCCGTTGGAAGAAAACTTTGGTAGTTGTCTCACATGATAGAGATTTTCTCAATACAGTATGTACTGAGATTATTCATCTCCATGATTTGAAACTTCATTTCTATCGTGGCAATTTTGATGATTTTGAGAGTGGATATGAACAGCGTCGTAAAGAGATGAATAAGAAGTATGAGATTTATGACAAGCAGTTGAAAGCAGCTAAAAGGAGTGGAAACCGAGCCCAGCAAGAAAAGGTTAAGGATCGAGCTAAGTTTGCAGCAGCTAAGGAAGCATCTAAAAGCAAAGGCAAGGGCAAGGTTGATGAGGATGATGCCCCATCGGAGGTTCCACAGAAGTGGAGGGATTACAGTGTGGAATTCCACTTTCCTGAACCCACTGAGCTTACACCCCCACTTTTACAGCTCATTGAGGTCAGCTTTAGCTACCCAAACCGAGAGGATTTTAGGCTATCAAATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCTAATGGAGCTGGAAAATCCACGTTGTTGAATCTTCTAGCTGGTGATTTGGTTGCTTCTGAGGGTGAAGTACGAAGAAGTCAGAAGTTGAGGATAGGAAGATACTCCCAACACTTTGTGGACCTTCTAACAATGGATGAAACAGCTGTGCAGTATCTTCTGCGTCTCCATCCCGATCAGGAGGGACTTAGCAAGCAGGAGGCTGTTCGTGCAAAACTTGGTAAGTTTGGGTTACCAAGTCATAACCATCTTACTCCTATTGCCAAACTATCAGGAGGGCAGAAAGCTCGAGTTGTCTTCACTTCTATTTCCATGTCAAAACCACACATTTTATTGTTAGATGAACCAACCAATCATCTGGACATGCAAAGTATTGATGCATTGGCAGATGCACTGGATGAATTCACTGGTGGAGTTGTTCTTGTCAGTCATGATTCAAGATTGATATCACGTGTGTGTGATGATGAAGAAAGGAGTCAAATTTGGGTTGTCGAGGATGGGACTGTCAAAACTTTCCCCGGAACATTTGAGGATTACAAGGAGGATTTGATGAGAGAGATTAAAGCTGAAGTTGATGACTGA 2181 0.4315 MGRKKPEDAGPSAKTKTTKDAPKKEKFSVSAMLASMDEKPDKPKKVSSTSSKPKPKSAPKASAYTDGIDLPPSDDEDDDLLEQEEEKNNASKRGSQQQRPDLKPLDVPIADKELKKREKKDLLAAHAAEQAKREALKDDHDAFTVVIGSRASVLEGDDDADANVKDITIENFSVSARGKELLKNASVKISHGKRYGLVGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANEELVKIRQEVTSLQNAASAEESVDKDDDVEDDTGEKLAELYEKLQLMGSDAAEAQASKILAGLGFTKNMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDLKLHFYRGNFDDFESGYEQRRKEMNKKYEIYDKQLKAAKRSGNRAQQEKVKDRAKFAAAKEASKSKGKGKVDEDDAPSEVPQKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVASEGEVRRSQKLRIGRYSQHFVDLLTMDETAVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSQIWVVEDGTVKTFPGTFEDYKEDLMREIKAEVDD 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g02110 726 MobiDBLite consensus disorder prediction 1 113 - -
Vian6g02110 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 404 IPR027417 -
Vian6g02110 726 Gene3D - 164 449 IPR027417 -
Vian6g02110 726 FunFam ABC transporter F family member 4 165 448 - -
Vian6g02110 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 712 IPR027417 -
Vian6g02110 726 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 139 719 - -
Vian6g02110 726 SMART AAA_5 191 396 IPR003593 GO:0016887
Vian6g02110 726 SMART AAA_5 525 701 IPR003593 GO:0016887
Vian6g02110 726 MobiDBLite consensus disorder prediction 70 84 - -
Vian6g02110 726 Coils Coil 119 139 - -
Vian6g02110 726 CDD ABCF_EF-3 167 397 - -
Vian6g02110 726 Pfam ABC transporter 182 352 IPR003439 GO:0005524
Vian6g02110 726 Gene3D - 464 726 IPR027417 -
Vian6g02110 726 Coils Coil 416 436 - -
Vian6g02110 726 Coils Coil 73 93 - -
Vian6g02110 726 ProSitePatterns ABC transporters family signature. 324 338 IPR017871 GO:0005524|GO:0016887
Vian6g02110 726 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 499 724 IPR003439 GO:0005524
Vian6g02110 726 Coils Coil 243 263 - -
Vian6g02110 726 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 167 427 IPR003439 GO:0005524
Vian6g02110 726 MobiDBLite consensus disorder prediction 1 26 - -
Vian6g02110 726 Pfam ABC transporter 516 651 IPR003439 GO:0005524
Vian6g02110 726 MobiDBLite consensus disorder prediction 433 474 - -
Vian6g02110 726 FunFam ABC transporter F family member 4 464 726 - -
Vian6g02110 726 CDD ABCF_EF-3 499 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g02110 Vian-Chr6 38047927 38050107 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g02110 499 702 Calmodulin-binding Proteins AT2G36910 27.928 3.03e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g02110 K06184 - gmx:100806865 1178.7