LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian6g02101	ATGGCCTCCGCTAGCCTCGGAACTGGTGGGGTCGGCAGTTCCAGGTCCGTTAACGCTGCCTTCAGGGGTTCTTCCAGTTCCGTCGATTGGCTTGGCAGAGAGATGCTCGAGATGAGATTGAGAGACCACGACGAAGACAGGGATAGTGAGCCTGACATCATCGATGGTGTGGGTGCTGAGACCGGGCACGTGATAAGAACCAGTATCGGTGGCCGAAATGGTCAATCTAAGCAGAATGTCAGTTATATTGCAGAACACGTGGTTGGAACAGGCTCTTTTGGTGTTGTTTTTCAGGCAAAATGTAGAGAAACGGGAGAGATTGTAGCCATCAAGAAGGTTCTCCAGGACAAGCGCTACAAGAATAGAGAGTTACAGATTATGCAAATGCTGGATCATCCAAATATTGTTGCCCTACGACATTGTTTCTTCTCAACAACTGACAAAGAAGAAGTTTACTTGAATCTTGTCCTTGAATATGTTCCTGAAACCGTGAATCGTATCGCAAGGAGCTACAGCAGGATTAACCAGCGAATGCCTTTGATATATGTAAAGCTCTATACCTACCAGATTTGCAGGGCACTTGCTTATATACATAACTGCATTGGTATATGTCACCGTGACATCAAACCTCAGAACCTACTTGTGAATCCGCATACTCATCAGCTGAAACTATGTGATTTTGGTAGTGCAAAAGTGTTGGTAAAAGGAGAACCAAACGTTTCTTACATCTGTTCAAGATACTACCGTGCTCCGGAACTTATATTTGGGGCCACCGAATATACAACTGCCATAGACATATGGTCTACTGGTTGCGTAATGGCTGAATTACTCCTTGGACAGGTTTTGGGAACTCCAACTAGGGAGGAGATAAAGTGCATGAACCCTAATTATACTGAGTTTAAGTTTCCACAGATAAAACCTCATCCATGGCACAAGGTCTTTCAGAAACGTTTACCCCCGGAAGCAGTGGATCTTGTCTGTAGGTTCTTTCAGTACTCTCCCAATTTGAGATGCACTGCGTTGGAGGCTTGCATTCATCCCTTTTTTGATGAATTGAGGGACCCGAACACCCGTCTTCCTAATGGTCGACCACTTCCTCCACTTTTCAATTTTAAATCTCAGGAACTTTCTGGCATACCCCCTGATGTCATCAATCTTCTTATTCCAGAGCATGCGCGTAAACAGAACTTATTTATGGCTTTGCACACTTAG	1212	0.4472	MASASLGTGGVGSSRSVNAAFRGSSSSVDWLGREMLEMRLRDHDEDRDSEPDIIDGVGAETGHVIRTSIGGRNGQSKQNVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFFSTTDKEEVYLNLVLEYVPETVNRIARSYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPLPPLFNFKSQELSGIPPDVINLLIPEHARKQNLFMALHT	403

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian6g02101	403	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	51	395	-	-
	Vian6g02101	403	Gene3D	Transferase(Phosphotransferase) domain 1	162	393	-	-
	Vian6g02101	403	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	203	215	IPR008271	GO:0004672\|GO:0006468
	Vian6g02101	403	FunFam	Glycogen synthase kinase-3 beta	66	161	-	-
	Vian6g02101	403	SUPERFAMILY	Protein kinase-like (PK-like)	81	376	IPR011009	-
	Vian6g02101	403	CDD	STKc_GSK3	77	352	IPR039192	-
	Vian6g02101	403	ProSiteProfiles	Protein kinase domain profile.	82	349	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian6g02101	403	SMART	serkin_6	82	349	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian6g02101	403	Pfam	Protein kinase domain	84	349	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian6g02101	403	FunFam	Shaggy-related protein kinase kappa	162	393	-	-
	Vian6g02101	403	ProSitePatterns	Protein kinases ATP-binding region signature.	88	112	IPR017441	GO:0005524
	Vian6g02101	403	Gene3D	Phosphorylase Kinase; domain 1	67	161	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian6g02101	Vian-Chr6	37978680	37983771	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian6g02101	88	357	Core Cell Cycle Gene Families	AT1G76540	32.881	8.79e-49	166

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Vian6g02101		Pkinase	6.5e-61	CL0016