Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g02083 ATGGAGATGGAGAGGTACACCGGTCAGCGGTGGAAACCTACTGATGATCAGGTCAAAATGATGACCAATATCTTCAACTACGGGGTCACACATCCCAGCAGAGCCCAAGTCGTCGAGATTGCATCTCGACTCAGGGCCTTCGGAGAAGTCAGTGAATATAATGTACACTGCTGGTTCAACAATCACGGCAACCGGGTCAGGCGCTGGCAAGCGGAGATAGACCCCAGTGGCACTCAGTTTTCTCAGTTACCGCTGTACATGTATGAAAATGGCTGGGTAATTATGAGGGCGCCGAGGCTGCTGAATTTGTTCCCCGTTCCAATCATCATCGAAGATGACAGGGACGAACGACAAATCCCTCCACCCATGCTTCTCACATTCCGAACCAGAGCTCCCTCGACGGAGCTCTCCCTTAGACCACCACAACCCGTTCGAGAATTTTTCCGTTAA 450 0.5133 MEMERYTGQRWKPTDDQVKMMTNIFNYGVTHPSRAQVVEIASRLRAFGEVSEYNVHCWFNNHGNRVRRWQAEIDPSGTQFSQLPLYMYENGWVIMRAPRLLNLFPVPIIIEDDRDERQIPPPMLLTFRTRAPSTELSLRPPQPVREFFR 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g02083 149 Pfam Homeodomain 9 68 IPR001356 GO:0003677
Vian6g02083 149 SUPERFAMILY Homeodomain-like 9 70 IPR009057 -
Vian6g02083 149 PANTHER WUSCHEL-RELATED HOMEOBOX 13 9 72 IPR044559 GO:0003700
Vian6g02083 149 Gene3D - 3 74 - -
Vian6g02083 149 ProSiteProfiles 'Homeobox' domain profile. 4 69 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g02083 Vian-Chr6 37839414 37839952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g02083 7 72 Wox Gene Family AT5G59340 39.394 6.78e-13 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian6g02083 Homeodomain 4.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g02083 - K06662 vum:124821070 263.462