Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g02077 ATGGAACTATCAGATTTGCAAAACAACAAGCAAAACATCACCAACACAAACAACACCAACACAAAAACAAACACAGGACCACCACCAGGAGCAGCTGCAGCTGCTGCTGCTGGCGGTGGCGGCGGTGGTAGTGGTGGTGGTGTTAGTGGTGCTACTCATCCTCGTCCACACCCCCACCATCATCACCAACAATCCTCTTCTTCCCATGTTGTCAGGCCAAACCCTCCATCTCCTTTCATCTCTTCCTCCACCACTTCTTCTTCTTCTAATTCTTCCTCCTCTTCCTCTTCTGCGTCAGCTTCTTCCCACATCATCGATGCCTCCTTGGCCATCGCCACCAGATCTGATGATTCCGCCAACAAGACCCAACCGCTCTCCACCGCCGTCGCCGCGCCCTCCCCCGCCGCCAACCCTCCCAAGCGATCCACCAAGGACAGGCATACCAAGGTAGACGGCCGCGGCCGCAGAATTCGAATGCCCGCCACCTGCGCTGCTAGGGTTTTCCAATTGACTAGAGAATTGGGCCACAAGTCCGACGGAGAGACCATCGAGTGGCTCCTCCAGCAGGCCGAGCCCGCCATCATCGCCGCCACCGGGACCGGCACCATCCCCGCTAATTTCTCCACCCTCAACGTCTCCTTCCGCAGCAGCGGCTCCACGTTGTCCGCACCGCCGTCCAAGTCGGCCCCGCACACCTTTCACGGCGCGCTCGCACTCGCTCACCACCCTTACGATGAAGCCTTTCAGCACACCGCTTTACTTGGCTTCCACCCTCACGCTCACGCTCACCAGCAGCACCAACAGCACCAGCAGCAACTTCTTTCCGCCGATCAAATCGCGGAAGCGCTTCCCAGCGGCGGCGGTGACTCCGGCGATAGCTATCTCAGGAAACGCTACCGAGAAGATCTGTTCAAAGACGATAACATTAACTCCCAATCACAGAACGAGAGCGGTGACGGTTCTTCGCCTAAAACTCCGAATCTACAGCTACCGAAGCAGCAGCCCCAGCAGCAAAACGAAGCTGGTTCTGGGCTTCTCAGGCCCACGAATTTGCTACCCGCCACAGCGATGTGGGCCGTGGCACCCGCTCCAGCGAGTGGACCTCCGGGCAGCACAATTTGGATGCTTCCGGTAACCGCGGCTTCTTCCGGTTCTGCTGCAGCTGCCGCTTCAGCCTCTTCTTCTGGCGGTGGTGGATCCTCTGCGAGTTCGGAGAGTCAGATGTGGCCTTTTCCTCAGAGTGGTTTCATGCCAAGGTTCAATCTTCCGAGTGCGCTTGAATTCCAAGGCGCACGTGCGGGTTCTCTGCAATTAGGGTCAATGTTAATGCCGCAGCAACCTTCTCAACATCTGGGTCTCGCCATGTCCGACTCCAACTTCGGCATGTTAGCTGCCCTTAATGCTTACTCAAGACCTGGTTTCAATATTAATTCCGACAATCATCATCCTCATCACCATCACCATCATCACCATCATCATCCCTTGGAGCATCAGCATCAACATCAACATCAACCCAGTGAGAGTGGAGAAGATGCTCCTAACAGCTCCCAATGA 1554 0.5611 MELSDLQNNKQNITNTNNTNTKTNTGPPPGAAAAAAAGGGGGGSGGGVSGATHPRPHPHHHHQQSSSSHVVRPNPPSPFISSSTTSSSSNSSSSSSSASASSHIIDASLAIATRSDDSANKTQPLSTAVAAPSPAANPPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSFRSSGSTLSAPPSKSAPHTFHGALALAHHPYDEAFQHTALLGFHPHAHAHQQHQQHQQQLLSADQIAEALPSGGGDSGDSYLRKRYREDLFKDDNINSQSQNESGDGSSPKTPNLQLPKQQPQQQNEAGSGLLRPTNLLPATAMWAVAPAPASGPPGSTIWMLPVTAASSGSAAAAASASSSGGGGSSASSESQMWPFPQSGFMPRFNLPSALEFQGARAGSLQLGSMLMPQQPSQHLGLAMSDSNFGMLAALNAYSRPGFNINSDNHHPHHHHHHHHHHPLEHQHQHQHQPSESGEDAPNSSQ 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g02077 517 MobiDBLite consensus disorder prediction 481 498 - -
Vian6g02077 517 MobiDBLite consensus disorder prediction 140 155 - -
Vian6g02077 517 MobiDBLite consensus disorder prediction 1 27 - -
Vian6g02077 517 MobiDBLite consensus disorder prediction 474 517 - -
Vian6g02077 517 Pfam TCP family transcription factor 142 300 IPR017887 -
Vian6g02077 517 MobiDBLite consensus disorder prediction 115 130 - -
Vian6g02077 517 ProSiteProfiles TCP domain profile. 143 197 IPR017887 -
Vian6g02077 517 MobiDBLite consensus disorder prediction 389 410 - -
Vian6g02077 517 MobiDBLite consensus disorder prediction 1 100 - -
Vian6g02077 517 MobiDBLite consensus disorder prediction 115 155 - -
Vian6g02077 517 MobiDBLite consensus disorder prediction 303 347 - -
Vian6g02077 517 MobiDBLite consensus disorder prediction 67 100 - -
Vian6g02077 517 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 78 463 IPR005333 GO:0003700
Vian6g02077 517 MobiDBLite consensus disorder prediction 308 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g02077 Vian-Chr6 37788231 37789784 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g02077 140 459 TCP Transcription Factor Family AT1G35560 48.148 6.81e-68 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vian6g02077 TCP 1.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g02077 - - vra:106776202 725.317