Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g02063 ATGGAGGGGAATTTCAGTTCCCATAATCCTCAACTAGCTTCTATCTTGAAGGAGAGTTACAGTAAGCAGGAGCATGATCATTCAGGGGAGGAGCATCATCTCAAAGAAGAAGATTATATGTCTACATCTTTCAATCTGAGGAATATTTCTAAGCTCATTCTTCCCCCACTTGGTGTTTCAAGCCAGAATCCTGTTAACTCAAAAGGGTGGATCATATCACCAATGGATTCCAGATACAGGTGTTGGGAGAGTTTTATGGTTCTTCTGGTAGCTTATTCTGCATGGGTTTATCCCTTCGAAGTTGCTTTCATGCACAAATCTTCTAACATGAAAATCTATGTAGCGGACACTGTTGTTGATATTTTCTTCGGTATTGACATTGTTTTGACATTCTTCTTGGCTTACATTGATCGAACAACTCATCTACTGGTTCGAGACAAGAAGAAGATTATAGTAAGATACTTGTCTACATGGTTCGTGATGGATTTGGCATCAACCATACCATATGAGGCACTTGGGTATTTGTTCACTGGAAAACGCAAAGTGGGTCTTCCATACTTCCTCTTGGGCCTGCTTAGATTTTGGAGAATAAGACGAGTCAAGCAATTCTTCACAAGGCTTGAGAAAGACATCAGGTTCAGCTATTTCTGGGTCCGATGTGCTAGGCTTCTTTCAGTAACCCTTTTTTCAATTCATTGTGCTGGATGTCTGTATTACATGCTAGCTGATCGTTATCCCCACAAAGGGAAGACATGGATTGGAGCTGTGAATCCAAACTTCAGAGAGACAAGCCTTCGGATCAGATACATTTCTGCCATGTACTGGTCCATCACTACCATGACCACTGTAGGTTATGGAGACCTTCATGCCGTCAACACCATGGAGATGATCTTCATTATTTTCTACATGCTCTTTAACCTTGGCCTAACTTCTTACTTGATCGGTAACATGACAAATCTTGTTGTCGAAGGAACTCGTCGAACCATGGAATTTAGAAATAGCATTGAGGCAGCATCAAACTTTGTGTGCCGAAATCGGTTGCCTCCGAGGTTAAAAGAACAGATCTTGGCGTACATGTGTTTGAGATTTAAGGCAGAGAGTTTGAATCAGCATCAGCTTATTGAGCAGCTACCAAAGTCTATTTGCAAAAGCATCTGCCAGCACTTGTTTTTTGAAACTGTGGAGAAAGTCTATCTTTTCAAAGGCGTATCAAAAGAAATAATTTTGTCCCTGGTTGCAAAAGTGAAGGCAGAGTACATACCACCGAGAGAGGATGTTATCATGCAAAATGAAGCACCAGATGATATTTACATTATTGTGTCTGGAGAAGTGGAGATCATAGATAGTGTGATGGAGAAAGAGAAAACTTTAGGGACTCTGCATACTGGGGACATGTTTGGAGAGGTTGGTGCCCTTTGTTGTAGGCCTCAGAGCTTTACCTACAGAACCAAGACTCTTACACAGCTCCTGAGACTGAAAACCAACACCCTTCTAGAATCAATGCAGATTAAAAGAGAAGACAACATACAAATACTCAAAAATTTTCTTCAGCATTTCAAGCAGATTAAGAATCTGAGTATCAGAGATTTGATGGTGGAGAATGTGGAAGAAGAGGATCCTAACATGGCTGTGAACTTGTTAACTGTGGCCAGCACAGGCAATGCTGCTTTTCTTGAGGAGCTTCTGAGAGCAGGTTTGGATCCTGACATTGGAGACTCTGAAGGGAAAACTCCATTGCATATAGCAGCATCAAATGGGCATGAAGAATGTGTTAAAGTGTTACTAAAGAATACATGCAACATACATATAAAAGACATGAATGATAACACTGCAATGTGGGGTGCTATAGCATCAAAACATTACTCCATATTTCGACTTCTATTCCAGTTTGCTGCTCTCTCAGACCAGAACACAGCAGGTGATCTTCTGTGTACAGCCGCCAAAAGAAACGAATTAACAGTGATGGCAGATCTTTTGAAACAAGGATTAAACGTTGACTCTAAAGATCGTCATGATGCAACAGCAATCCAAATTGCTATGAAAGAAAATCATGTGGAAATGGTTAAGTTGCTTGTCCTGAATGGTGCAGATGTATCTGATGTACATAGTCATGAATTTTGTCCATCCACCATGACTGAAATGCTGCATAATTGTGAAGTTGGACATAGAATTAATGTAATTGAGTTTATGCCGGATGAAGTTGCATCAAAAGGGAAACATCAAGAGGAGGAACATATTGGAGAAACAAGATATGATGGACCAAAGATTGCTAGAGTAAGCATATATAGAGGTCATCCTGTAGTGAGAAGAGAAAAAGGTATCATGCAAGCTGGGAAGCTAATAAGGATGCCTAATTCATTAGATGAACTCAAAAAAATTGCAGGTGAAAAATTTGGGATTGATGCGAAAGATGCAATGGTGACAAATGAAGAAGGAGCAGAAATAGACTCCATTGATGTCATCTCTTCTCTCCAGTCCTTCCATTCTCAGCTCACCATTTTGGTCCGGAAGCTTCGCTTGCCTGTTGGAGGCAAATGGTTGGATGAATACATGGACGAAAGCTCGAGGCTTTGGGATTCTTGTCATGTTCTCAAATCAGCCATTTCTGGAATGGAGAGTTATTACTCGGCTGCCTCTAACATAGCTTCTTCTTTGGATGGTTACCATCATTTCACTCCCGAAATTGCACGCCAGGTTGTTCGGGCAATAAATGTTTGTCAAAGGGAGATTCTAGGATTGGAAGAGGAAAACAAGAGCTTGATGGAAACAAGGATTGAACCGTTGTCTCAATGTTTGATTCAGAACATCTCAATGGAATCGAAGTTGAATGGATTCAGTGGATTCCGAGGGGTTCTGTATGCAATGAGGAGTGTTAGCTCACTGCTTCTGATGATTCTGCTTTGCGGGCTTGCGTATTGTTGGTCCTCCTCTTGCTTTCACCAAGGGTACGAGGAAGACATGGTTTTTGGATCTGGGTTTATGGTTTCAATGGCCATATTGCAGCAGAAAGTGGCAGAGGAGATAGACCAGACAGAAGGGCAGCCAGGGATTCTGCTGTTCGAGTTCCAACAAGCAAAGAGCGCCATGGAAGAACTGAAAGTTGAATTGGAGGGAATAGCAGGTTACGAAGAACATTCTGAGATCCAACAAAAAGTCGACAACGTCAAGAGTTGCTTTGGTTTGTTGAGATGTGGGGTCGACACTATAGCGGGGCAGCTTGATGATTTCTTTGATGAAATAGTAGAAGGAAGGAAGAAGCTTTTGGACATGTGCAGCAATAGGTAG 3285 0.4152 MEGNFSSHNPQLASILKESYSKQEHDHSGEEHHLKEEDYMSTSFNLRNISKLILPPLGVSSQNPVNSKGWIISPMDSRYRCWESFMVLLVAYSAWVYPFEVAFMHKSSNMKIYVADTVVDIFFGIDIVLTFFLAYIDRTTHLLVRDKKKIIVRYLSTWFVMDLASTIPYEALGYLFTGKRKVGLPYFLLGLLRFWRIRRVKQFFTRLEKDIRFSYFWVRCARLLSVTLFSIHCAGCLYYMLADRYPHKGKTWIGAVNPNFRETSLRIRYISAMYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTSYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVCRNRLPPRLKEQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFFETVEKVYLFKGVSKEIILSLVAKVKAEYIPPREDVIMQNEAPDDIYIIVSGEVEIIDSVMEKEKTLGTLHTGDMFGEVGALCCRPQSFTYRTKTLTQLLRLKTNTLLESMQIKREDNIQILKNFLQHFKQIKNLSIRDLMVENVEEEDPNMAVNLLTVASTGNAAFLEELLRAGLDPDIGDSEGKTPLHIAASNGHEECVKVLLKNTCNIHIKDMNDNTAMWGAIASKHYSIFRLLFQFAALSDQNTAGDLLCTAAKRNELTVMADLLKQGLNVDSKDRHDATAIQIAMKENHVEMVKLLVLNGADVSDVHSHEFCPSTMTEMLHNCEVGHRINVIEFMPDEVASKGKHQEEEHIGETRYDGPKIARVSIYRGHPVVRREKGIMQAGKLIRMPNSLDELKKIAGEKFGIDAKDAMVTNEEGAEIDSIDVISSLQSFHSQLTILVRKLRLPVGGKWLDEYMDESSRLWDSCHVLKSAISGMESYYSAASNIASSLDGYHHFTPEIARQVVRAINVCQREILGLEEENKSLMETRIEPLSQCLIQNISMESKLNGFSGFRGVLYAMRSVSSLLLMILLCGLAYCWSSSCFHQGYEEDMVFGSGFMVSMAILQQKVAEEIDQTEGQPGILLFEFQQAKSAMEELKVELEGIAGYEEHSEIQQKVDNVKSCFGLLRCGVDTIAGQLDDFFDEIVEGRKKLLDMCSNR 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g02063 1094 PRINTS EAG/ELK/ERG potassium channel family signature 116 126 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian6g02063 1094 PRINTS EAG/ELK/ERG potassium channel family signature 313 322 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian6g02063 1094 PRINTS EAG/ELK/ERG potassium channel family signature 269 286 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian6g02063 1094 PRINTS EAG/ELK/ERG potassium channel family signature 295 306 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian6g02063 1094 PRINTS EAG/ELK/ERG potassium channel family signature 127 136 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian6g02063 1094 ProSiteProfiles cAMP/cGMP binding motif profile. 399 518 IPR000595 -
Vian6g02063 1094 CDD CAP_ED 399 512 IPR000595 -
Vian6g02063 1094 FunFam Potassium channel KAT3 81 323 - -
Vian6g02063 1094 Pfam Ankyrin repeats (3 copies) 550 629 IPR002110 GO:0005515
Vian6g02063 1094 ProSiteProfiles Ankyrin repeat profile. 671 703 IPR002110 GO:0005515
Vian6g02063 1094 Pfam Ion transport protein 80 328 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vian6g02063 1094 ProSiteProfiles KHA domain profile. 758 847 IPR021789 -
Vian6g02063 1094 Gene3D - 543 720 IPR036770 -
Vian6g02063 1094 SMART ANK_2a 671 700 IPR002110 GO:0005515
Vian6g02063 1094 SMART ANK_2a 574 603 IPR002110 GO:0005515
Vian6g02063 1094 SMART ANK_2a 541 570 IPR002110 GO:0005515
Vian6g02063 1094 SMART ANK_2a 607 638 IPR002110 GO:0005515
Vian6g02063 1094 Pfam Cyclic nucleotide-binding domain 419 502 IPR000595 -
Vian6g02063 1094 ProSiteProfiles Ankyrin repeat region circular profile. 574 605 - -
Vian6g02063 1094 FunFam Potassium channel KAT2 387 523 - -
Vian6g02063 1094 SUPERFAMILY Ankyrin repeat 505 718 IPR036770 -
Vian6g02063 1094 Gene3D - 80 322 - -
Vian6g02063 1094 Coils Coil 903 923 - -
Vian6g02063 1094 Pfam KHA, dimerisation domain of potassium ion channel 758 822 IPR021789 -
Vian6g02063 1094 SUPERFAMILY Voltage-gated potassium channels 74 322 - -
Vian6g02063 1094 SMART cnmp_10 399 516 IPR000595 -
Vian6g02063 1094 ProSiteProfiles Ankyrin repeat region circular profile. 671 699 - -
Vian6g02063 1094 SUPERFAMILY cAMP-binding domain-like 326 518 IPR018490 -
Vian6g02063 1094 PANTHER POTASSIUM CHANNEL AKT1 45 825 IPR045319 GO:0005249|GO:0006813
Vian6g02063 1094 Gene3D Jelly Rolls 367 541 IPR014710 -
Vian6g02063 1094 ProSiteProfiles Ankyrin repeat profile. 574 606 IPR002110 GO:0005515
Vian6g02063 1094 PRINTS Ankyrin repeat signature 575 590 IPR002110 GO:0005515
Vian6g02063 1094 PRINTS Ankyrin repeat signature 687 701 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g02063 Vian-Chr6 37676006 37685161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g02063 1 579 Ion Channels AT4G22200 70.256 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g02063 K21867 - gmx:100798422 1445.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g02063 6 37676006 37685161 Vian6g02063 6 37676006 37685161 ECH
Vian6g02063 6 37676006 37685161 Vian1g03427 1 56748063 56749269 PCT