Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g02057 ATGGGAAGAAAAGGTGGAGGAAGGTTTTTTGAAAAATCTCTCCGTCGCCGTATTGAGATCTGCACGTCCAAATACTCCACTGCCGAAGAAATCGCCAACCATCTCCGTTCAACTTATCCCGATTACCACAGAACCAAACAACAAACCCTAATTCGGTTTGTTCAGGAAGCTATTCATTCCATGGAGAAGCTGAATCACACTCCCACGCCTAAGTATTCCGACGACGGCAACATAGAGTCCCAACGCGCGTCTCGAAAGCGTAAGAAGAATATTGACGAAGGTGAAGAAAGGCTGAAGAAAATGGAAGCTTTACACGTGCGAAGGAGGGTGCAGAGTTCTTCGGAGAGTAATGACGAGGAGAGTAATGATGAGGAATCGGTGTCGGAGGACGCAATTTACGGTGAGAAGTTGGAGCCTCAGTTTGATTTGATGAAGGAAATGCTAAGGATGTCATATACGCCAAAGAAGGTGGCGGCAGCAGCAACGGAAGAAAAGAACATTGAAATAGAGATGGGTAATTTAAGTAAAGGCACGGAGATGGGTAATATAAGTAAAGCCACGGTTCTGAATGAGGTGGGAGACCCATCTCTGCTTTCGGTTTCGGTTTCAAACGGTGAGGGGAAGAAAGATTGGCCTAGATTTAAGGATTTTGGTGGGATGAAAGAAGTTTTGGAGGAACTAAGAGAAGAGTTGATTGTACCTTTGGTTCATGGTGAAATTCTTAGAAAATTAGGAGGGAAGCCAAAGGCAGTTGGCATTTTATTGCAGGGTCCACCTGGATGTGGGAAGACCACACTTGCTCATGCTATAGCTAATGAGTCAGGTCTTCCTTACTATCGGATTTCAGCTACTGAACTAGTCTCTGGGGTATCAGGTGCATCTGAAGAAAATATTAGGGAATTTTTTGCTAAAGCTTACAGAACTGCACCTTCTATAGTCTTTATTGATGAGATTGATGCAATTGGTTCTAAAAGAGAGAATTTGCAGCGGGAAATGGAAAAACGAATGGTGATGCAATTAAGCACTTGCATGGATCAATCAACTGCTGATAATGTTATTGTAATAGGAGCTACAAATAGGCCTGATTCTCTTGACCCTGCCTTAAGAAGACGATTTGATCGTGAAATTAGCATTTGTGAACCTGATGAATCCGCCAGGAAGGAGATTCTATCTATTCTTACTTCTAATTTTAGATTTGATGGTTTATTTGATCTACATGAAATAGCCAAGTTTACATCAGGATTTGTTGGTGCTGATTTGGTAACTCTAGTTGATAAGGCTCTTCGATGGGCAACGAAGAGAATAATTAACGAAAGAACGAAGAGAATAATTGACCAAAGGAGACATGAAATACCTGAACTCATGAGCGAGCATATTGAAGAATGGCGGAGGGAACCTTTGTCCACGGAAGAATTAGATGAGTTTGCCTTCATCAAAATCTCCGATTTTGAGCAAGCATTAAAAAAGGTACAACCTTCATTAAGAAGAGAAGGATTTGCTAGCATTCCTAAGGTAAAATGGGAAGACGTTGGGGGGCTTGATCATTTAAGAAAGGAGTTTGAACGATATATTGTAAGGCGTATAAAATATCCTGAAGATTATGAGGCACTTGGGATTAATCTCGAGACTGGATTTTTGCTTTATGGACCTCCTGGTTGTGGTAAAACATTGATTGCCAAAGCTGTTGCCGGTGAGGCAGGGGCTAGTTTTATCCATATTGAGGGTGCCCAACTTTTAAATAAATATGTTGGGGAAAGTGAGCTTGCCGTTCGAACATTGTTTAGCCGTGCAAGGTCATGTGCACCATGTATAATTTTCTTTGACGAGATTGATTCATTGACAAAAGAACGTGGTAAAGAGGGTGGTTGGGTTACTGAGCGACTGTTGAACCAGTTGCTTATCGAGTTGGATGGTGGAGAGCATAGACACGGTGTTTTTGTGATTGGTGCTACAAATAGGCCTGAGATGATGGATCGTGCTCTCTTACGGCCGGGTAGATTTGGTAAACTTCTTTATGTTCCTCTACCTGGCCTTGATGAGCGAGTTTTGATATTGAAAGCTCTTGCAAGGACTATGACAATTGATGCCACTGTGGATTTGAGTGCAATTGCCAGAATGGAAGTTTGTGAAAACCTAAGTGGCGCTGATCTTCGTAAATTGGATTATAGGAAAAGAGGGGAATTAGTTTGGGAGATACTGATTGTATTGGCTATACAGATGAGTGAAGCGGCAATGGCTGCTTGGGATGAGAAAGATAAAACTGTCAAGAGTATTCATTTTGAGATGGCACTAAGTAAAATCTCGCCGTCTGTGTCTAACAGGGAAAAGCAGTATTATCAGCACTTGTCGGAGAGGTTTAAAGTGGCGTGA 2370 0.4207 MGRKGGGRFFEKSLRRRIEICTSKYSTAEEIANHLRSTYPDYHRTKQQTLIRFVQEAIHSMEKLNHTPTPKYSDDGNIESQRASRKRKKNIDEGEERLKKMEALHVRRRVQSSSESNDEESNDEESVSEDAIYGEKLEPQFDLMKEMLRMSYTPKKVAAAATEEKNIEIEMGNLSKGTEMGNISKATVLNEVGDPSLLSVSVSNGEGKKDWPRFKDFGGMKEVLEELREELIVPLVHGEILRKLGGKPKAVGILLQGPPGCGKTTLAHAIANESGLPYYRISATELVSGVSGASEENIREFFAKAYRTAPSIVFIDEIDAIGSKRENLQREMEKRMVMQLSTCMDQSTADNVIVIGATNRPDSLDPALRRRFDREISICEPDESARKEILSILTSNFRFDGLFDLHEIAKFTSGFVGADLVTLVDKALRWATKRIINERTKRIIDQRRHEIPELMSEHIEEWRREPLSTEELDEFAFIKISDFEQALKKVQPSLRREGFASIPKVKWEDVGGLDHLRKEFERYIVRRIKYPEDYEALGINLETGFLLYGPPGCGKTLIAKAVAGEAGASFIHIEGAQLLNKYVGESELAVRTLFSRARSCAPCIIFFDEIDSLTKERGKEGGWVTERLLNQLLIELDGGEHRHGVFVIGATNRPEMMDRALLRPGRFGKLLYVPLPGLDERVLILKALARTMTIDATVDLSAIARMEVCENLSGADLRKLDYRKRGELVWEILIVLAIQMSEAAMAAWDEKDKTVKSIHFEMALSKISPSVSNREKQYYQHLSERFKVA 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g02057 789 Gene3D - 676 765 - -
Vian6g02057 789 ProSitePatterns AAA-protein family signature. 645 663 IPR003960 GO:0005524|GO:0016887
Vian6g02057 789 ProSitePatterns AAA-protein family signature. 352 371 IPR003960 GO:0005524|GO:0016887
Vian6g02057 789 Gene3D - 205 379 IPR027417 -
Vian6g02057 789 Pfam ATPase family associated with various cellular activities (AAA) 253 378 IPR003959 GO:0005524|GO:0016887
Vian6g02057 789 Pfam ATPase family associated with various cellular activities (AAA) 546 674 IPR003959 GO:0005524|GO:0016887
Vian6g02057 789 PANTHER AAA-FAMILY ATPASE 88 787 - -
Vian6g02057 789 Gene3D - 381 497 - -
Vian6g02057 789 Gene3D - 503 779 IPR027417 -
Vian6g02057 789 Pfam Nucleolin binding domain 4 62 IPR031996 -
Vian6g02057 789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 503 786 IPR027417 -
Vian6g02057 789 MobiDBLite consensus disorder prediction 78 116 - -
Vian6g02057 789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 497 IPR027417 -
Vian6g02057 789 MobiDBLite consensus disorder prediction 63 135 - -
Vian6g02057 789 FunFam Ribosome biogenesis ATPase RIX7 203 379 - -
Vian6g02057 789 SMART AAA_5 249 382 IPR003593 GO:0016887
Vian6g02057 789 SMART AAA_5 541 677 IPR003593 GO:0016887
Vian6g02057 789 FunFam ATPase, AAA family protein 503 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g02057 Vian-Chr6 37589355 37593534 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g02057 478 787 Calmodulin-binding Proteins AT3G56690 41.083 6.05e-63 227