Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g02044 ATGTCTCTAACAGGTCGTTCTCGTATAGTTGTGAATGGGGTCAGAAGAACAAGAACTTTTCACTATTTCTGGTGCCTGTACTGCCAAAGAACCGTGAGGATACCCTTTACAAACAACGATGGTTCTACATGTCCCTATTGCTTCCACCACCTGCGTTACGAGCTTGATATCTCAAGGCCAAGGCTTCTCATGAACGTGCCAAATAACTTGCAACCTTCACCAGCTACTCAACTTTTGCATAACTTGGCCCTCATTCTTGATCCACCTCTAAGGAGGCAAAACAACAACCATTTCAACACAACCACACATTGGGAAACAGAAAATGAACATGGTGCAGATTCTCAGGCTTGGATCACACTCCGATTTCCAAGGCCAACTCCTGCACCTAGGCCTATTTCCCCACCACAAAACATGGTTCCTCCGACCAATGACACTGACACGTTATTAGATGACTTCATCGATGGAATGATTCAGAACAATAACAGACCAGGGCCACCTCCTGCAGCATCTTCTGCCATTGCAGCATTGCCAATGGTGAAACTGACACAAACCCATTTGGGTAGTGATCCCAATTGCCCAATCTGCAAAGATGAGTTTGAGCTCGACATGGAAGCCAGAGAGTTGCCATGCAATCATTTCTACCATTCTGACTGCATCATCCCTTGGCTGCGCATGCACAACACTTGCCCCGTATGCCGATACGAGCTACAAGGTGTGGTTACTCCTAATGCTAATTACAGTTTCCAAAGCGATGAGAATGACCTGAGGTTTGCTTTTGAAGATATCTCAAACAGCTTGAACTGGATTTGGAACCACTTGGCTTCATTCAGGCCTATTCGTTCAGTCCTAGATTGGACACGGTCCTACTTTGATTTCCAAGAAACTCGTCTTCGTGTTCGTCGAGGTAGTTCTTCTTGGTGGCGATCATTGTTCGTTGTATAG 942 0.4575 MSLTGRSRIVVNGVRRTRTFHYFWCLYCQRTVRIPFTNNDGSTCPYCFHHLRYELDISRPRLLMNVPNNLQPSPATQLLHNLALILDPPLRRQNNNHFNTTTHWETENEHGADSQAWITLRFPRPTPAPRPISPPQNMVPPTNDTDTLLDDFIDGMIQNNNRPGPPPAASSAIAALPMVKLTQTHLGSDPNCPICKDEFELDMEARELPCNHFYHSDCIIPWLRMHNTCPVCRYELQGVVTPNANYSFQSDENDLRFAFEDISNSLNWIWNHLASFRPIRSVLDWTRSYFDFQETRLRVRRGSSSWWRSLFVV 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g02044 313 Pfam Ring finger domain 191 233 IPR001841 -
Vian6g02044 313 CDD RING-H2_RNF126-like 191 233 - -
Vian6g02044 313 SMART ring_2 192 232 IPR001841 -
Vian6g02044 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 111 236 - -
Vian6g02044 313 FunFam E3 ubiquitin-protein ligase RING1-like 155 239 - -
Vian6g02044 313 SUPERFAMILY RING/U-box 173 237 - -
Vian6g02044 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 239 IPR013083 -
Vian6g02044 313 ProSiteProfiles Zinc finger RING-type profile. 192 233 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g02044 Vian-Chr6 37507960 37509022 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g02044 1 295 C3H Transcription Factor Family AT1G68180 32.215 2.08e-39 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g02044 K11982 - gmx:100793656 432.18