Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g02034 ATGGACAGTGCAATTAGAAGAATTGACGCGGCGATTAAGAGTAGCAGTGATTCAATTTTGGGAAAAGGAGAATACCGCGTCCGTGGATTTGATTCTGCGGTGGACAGTGCCGTAAGGAGTAGGACGGCGTCGAATTCGGAAATATTTTCTGTCCATGGATTCGGTTGGACAGTGAAGAATGCCATCCAGAGTACCACTGCACCAGATTTCCAAACACACGACAGTGTTCGTAGTTTTGGTTGCGCGGTGGAGAATGCAATAAGGAGTGGGGCTGGGCCAAATCCCCATCCTCTGCACAGTTTCGCTTCGGCGGTGGATGAAGCCATCTGCAGCAGAGTTGTTGCCGAAGCCGAAGTTGAAGGTGAAACCGAAGAGTCGCCCAACAGAGAGGGCTACGCGGGATCATGGCAGAAGGGCTACATGTTAGGGAAAGGCTCCTTCGGCACAGTCTACGAAGCATTTACAGATGATGGAAACTTTTTTGCTGTAAAGGAGGTGTCCTTGTTGGATCATAGAAGCGAGGGCAAACAGAGCATTTTCCAGCTTCGGCAGGAAATATCTCTTTTGAGTCAGTTCCGGCATGACAACATAGTTCAATATCTAGGCACAGAGAAGGATAATGATAAGCTGTATATCTTCCTCGAGATTGTAACAAAAGGATCATTGGCAGTTCTCTATCAAAAGTATCAATTAATGGACTCTCAAGTTTCTGCATATACAAGGCAAATTTTAAGCGGCTTGAAGTATCTTCATGATCGTAATGTGGTTCACAGGGACATCAAGTGTGCCAATATATTGGTTGATGTAACCGGGTCCATCAAGCTTGCAGATTTTGGTTTGGCAAAGATTACCAAGTTAAATGATGTTAAATCAATTGGAGGCTCCCTGAACTGGATGGCCCCTGAGGTTGTTAAGTTGAGGAGTTGTGGATATGGGCTAGCAGCAGATATATGGAGCTTAGGATGCACAGTATTAGAGATGTTGACACGACAACCTCCTTACTACCATTTGGAAGAAATGCAAGTGATATTTAAAATCGGCCGTGGTGAACCTCCACCTGTTCCGGCGTCGCTGTCAACAAATGCCCGAGATTTCATTCTTGAATGCTTACAAGCTGACCCGAACAAACGCCCAACTGTTTCTCAACTATTGGACCATCCATTTGTAAACCTTTGCACCACTGTTAAATATGGAGACCATAGTGAAGATGTATTTTCACATTGA 1224 0.451 MDSAIRRIDAAIKSSSDSILGKGEYRVRGFDSAVDSAVRSRTASNSEIFSVHGFGWTVKNAIQSTTAPDFQTHDSVRSFGCAVENAIRSGAGPNPHPLHSFASAVDEAICSRVVAEAEVEGETEESPNREGYAGSWQKGYMLGKGSFGTVYEAFTDDGNFFAVKEVSLLDHRSEGKQSIFQLRQEISLLSQFRHDNIVQYLGTEKDNDKLYIFLEIVTKGSLAVLYQKYQLMDSQVSAYTRQILSGLKYLHDRNVVHRDIKCANILVDVTGSIKLADFGLAKITKLNDVKSIGGSLNWMAPEVVKLRSCGYGLAADIWSLGCTVLEMLTRQPPYYHLEEMQVIFKIGRGEPPPVPASLSTNARDFILECLQADPNKRPTVSQLLDHPFVNLCTTVKYGDHSEDVFSH 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g02034 407 SMART serkin_6 136 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g02034 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Vian6g02034 407 ProSitePatterns Protein kinases ATP-binding region signature. 142 164 IPR017441 GO:0005524
Vian6g02034 407 Pfam Protein kinase domain 138 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g02034 407 SUPERFAMILY Protein kinase-like (PK-like) 134 390 IPR011009 -
Vian6g02034 407 ProSiteProfiles Protein kinase domain profile. 136 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g02034 407 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 112 390 - -
Vian6g02034 407 Gene3D Transferase(Phosphotransferase) domain 1 135 404 - -
Vian6g02034 407 FunFam Mitogen-activated protein kinase 1, putative, expressed 134 401 - -
Vian6g02034 407 PRINTS Tyrosine kinase catalytic domain signature 358 380 IPR001245 GO:0004672|GO:0006468
Vian6g02034 407 PRINTS Tyrosine kinase catalytic domain signature 315 337 IPR001245 GO:0004672|GO:0006468
Vian6g02034 407 PRINTS Tyrosine kinase catalytic domain signature 249 267 IPR001245 GO:0004672|GO:0006468
Vian6g02034 407 PRINTS Tyrosine kinase catalytic domain signature 214 227 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g02034 Vian-Chr6 37420101 37431791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g02034 135 389 MAP Kinase Kinase Kinase AT4G08500 64.453 1.38e-114 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vian6g02034 Pkinase 7.3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g02034 - K13414 vra:106774995 757.673