Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g02020 ATGCATGGGTTGAAACCAGTGTTGCTGATGGTGTTAGTGCAAATTGCATACACTGCTGTCAATGTGCTTTTCAAACTCGCCATAAACGACGGAATGAGTGTAAAAGTTGCCACAACGTATCGTCTCGCTTTTGGATCTGCTTTCACTGTTCCTCTCGCTCTCATTTCTGAAAGGAAGAAAAGACCAAAGATGACTTGGAGGGTTCTTTTCATGGCATTTCTCTGTGGATTATTCGGGGGAAGTTTATTTCAGAATCTTTTCTACCAGTCCTTGGCTTTAACATCAGCAACGTTTGCCTCCGCTCTCTACAATCTCATTCCGGCTATCACCTTTGTGATGGCCATTTCCTGCGGTTTCGAAAGGTTGAATTGGAGGGCAGCCGCAGGAAGGGCCAAGGTGTTGGGAACTATAATTGGGATTGGTGGGGCAATGGTGTTGACTTTTATCAAAGGTGCAGAGATTAATATCTGGCCTTTCCACATCAACCTTATGCATCCACGTCAGCACCAAGATGGCCACGTGGCACAGTTAAATTCTGACTCTAGCAATACATTGTTGGGGGCTCTTTGTTCCATATTAAGCTGCTTCTCTTTTTCTCTCTGGCTCACCATTCAGGCTAAGATGAGCAAAGAATACCCTTGTCACTATTCAAGCACGGCTCTGATGTCTACGGCAGGAGCAATACAGGCCGCTGCTTTTGGTTTCTGTGTTGAGAGAGATTTCAGCCAATGGAAGTTGGGTTGGAATATCAGGCTACTTGCTGTGGCTTATTCGGGAATCGTGGCCTCTGGAATAGTAGTTATTATTACTGCATGGTGCATACAAATGAGAGGGCCTCTTTTTGCGTCTGTTTTCAACCCGCTAATGCTTGTGCTTGTGGCTATTGCTGGTTCTTTGATGCTCAACGAGAATTTGTATGTAGGAAGTGTGGTTGGAGCAGTGCTGATTGTGTGTGGGTTGTACATGGTTCTGTGGGGTAAAAGTAAAGAGATGAAGAACATCACTCAGTTAGTGCCATCGGAGACCATCCGAGAAGCTGAAGCCGTAGAAGTTGTTGTCGTGTCCACCCCAATGGATCATGATAAATGTGACCACAACAACCGAAGCGAAATCACTGCTATTACAAGGAATCTTGACAAAGATTGTGAGGATTTGACAAAACAATAA 1167 0.4482 MHGLKPVLLMVLVQIAYTAVNVLFKLAINDGMSVKVATTYRLAFGSAFTVPLALISERKKRPKMTWRVLFMAFLCGLFGGSLFQNLFYQSLALTSATFASALYNLIPAITFVMAISCGFERLNWRAAAGRAKVLGTIIGIGGAMVLTFIKGAEINIWPFHINLMHPRQHQDGHVAQLNSDSSNTLLGALCSILSCFSFSLWLTIQAKMSKEYPCHYSSTALMSTAGAIQAAAFGFCVERDFSQWKLGWNIRLLAVAYSGIVASGIVVIITAWCIQMRGPLFASVFNPLMLVLVAIAGSLMLNENLYVGSVVGAVLIVCGLYMVLWGKSKEMKNITQLVPSETIREAEAVEVVVVSTPMDHDKCDHNNRSEITAITRNLDKDCEDLTKQ 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g02020 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 246 329 - -
Vian6g02020 388 PANTHER WAT1-RELATED PROTEIN 5 336 IPR030184 GO:0016020|GO:0022857
Vian6g02020 388 Pfam EamA-like transporter family 186 324 IPR000620 GO:0016020
Vian6g02020 388 Pfam EamA-like transporter family 5 146 IPR000620 GO:0016020
Vian6g02020 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 40 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g02020 Vian-Chr6 37313064 37314847 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g02020 4 381 Nodulin-like Gene Family AT1G25270 39.683 1.78e-94 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g02020 - - gmx:100798755 640.573