Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g02019 ATGAGAGATATAGGGAAAGTAGTGCATGGGTTGAAACCAGCCCTGCTGATGTTGATGGTGCAGATTGCATTTGCTTCCGTGAACGTGCTCTACAAACTTGCCATAAATGATGGAATGAGCGTGAGAATAATCACTGCCTACCGTCTCATTTTCGCTGCAGCTTCTACAGTTCCTCTTGCTCTTATTTTTGAAAGGAAAAACATACGAACGCTGACTTGGAGGGTGATTTTAAAGTCATTTTTCTGTGGACTATTCGGGGGAAGTCTATTCCAAAACCTTTATTTCGAGTCCTTGAAATTGATTTCAGCAACATTTGCTTCTGCTGTTTTTAATCTCATTCCTGCCGTCACTTTTATCTTGGCCGTCACTTGCGGGGCAGCTGGTAAGGCTAAGGTGTTGGGAACGATAACAGGCGTTGTCGGGGCAATGATGCTGACCTTTCTCAAAGGTGTAGAAATCAACATCTGGACCTCCCACATTAACCTTTTGCATAAAAAGGGTACCACAGAAACGCTAAATGGTGACTCTGGAAGTAAATTGCTAGGAGTTTTTTGTGGTCTTGGAAGCTGCTTATGTTTTGCATTATGGCTCATTATTCAGGCTCAGATGAGTAAAGAGTTTCCAGGCCATCACTCAAGTACAGCTCTGATGTCAACAATGGGGGCAATTCAAGCCACTGTTTTTGCCCTGTGTATTGAGAAGGATTGGAGCCAATGGAGGTTGGGTTGGAACATTAGGCTTCTAGCTTCAGCATATTCGGGAATTGTGGCTTCTGGAATAATGGTTGTTGTGATAGCATGGTGTGTAAGGATGAGGGGTCCATTGTATGCATCTGTTTTCAATCCTCTACTGCTAGTGCTTGTGGCAGTTGCTGGTTCCTTGATGTTGGATGAGAAGCTATACGTAGGAAGTGTGATGGGAGCAGTGCTAATTGTGATGGGATTGTACATGGTGCTGTGGGGTAAGAGCAAGGAAATGAAAAGAGTGAGTGACTTAGAAACTACTCCAGAAATTGAAGAAATTGAGGTTGTTGTGACGTGTAGGGCAACAGAGGATGATAAAAGCAACGACAAGTACAACTGTAGTGAGAGGAACATTATTGAGAAGTGTAATGATAATGCATCAAAAAGCAGAGATGAAGGACAAGACAACGAAAGTAATGGGAAAGAAGATATGGGTAGCTCTGGGAAGCCTTGA 1197 0.4319 MRDIGKVVHGLKPALLMLMVQIAFASVNVLYKLAINDGMSVRIITAYRLIFAAASTVPLALIFERKNIRTLTWRVILKSFFCGLFGGSLFQNLYFESLKLISATFASAVFNLIPAVTFILAVTCGAAGKAKVLGTITGVVGAMMLTFLKGVEINIWTSHINLLHKKGTTETLNGDSGSKLLGVFCGLGSCLCFALWLIIQAQMSKEFPGHHSSTALMSTMGAIQATVFALCIEKDWSQWRLGWNIRLLASAYSGIVASGIMVVVIAWCVRMRGPLYASVFNPLLLVLVAVAGSLMLDEKLYVGSVMGAVLIVMGLYMVLWGKSKEMKRVSDLETTPEIEEIEVVVTCRATEDDKSNDKYNCSERNIIEKCNDNASKSRDEGQDNESNGKEDMGSSGKP 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g02019 398 MobiDBLite consensus disorder prediction 370 398 - -
Vian6g02019 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 147 - -
Vian6g02019 398 MobiDBLite consensus disorder prediction 370 392 - -
Vian6g02019 398 Pfam EamA-like transporter family 181 319 IPR000620 GO:0016020
Vian6g02019 398 Pfam EamA-like transporter family 12 146 IPR000620 GO:0016020
Vian6g02019 398 PANTHER WAT1-RELATED PROTEIN 12 333 IPR030184 GO:0016020|GO:0022857
Vian6g02019 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 238 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g02019 Vian-Chr6 37292449 37294446 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g02019 11 365 Nodulin-like Gene Family AT1G25270 39.118 6.85e-88 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g02019 - - gmx:100809587 479.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g02019 6 37292449 37294446 Vian6g02019 6 37292449 37294446 ECH
Vian1g02943 1 48206297 48212223 Vian6g02019 6 37292449 37294446 PCT
Vian6g02019 6 37292449 37294446 Vian1g02942 1 48187325 48192084 PCT