Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g02004 ATGGCTGCTGTCTTGCTCAGACTTCATTTTCATGACTGCTTTGTTGAGGGTTGTGATGGTTCAATTCTGATTGAGAATGGTCCAGAATCAGAGAGACACGCATTTGGACATCAAGGGGTTAGAGGGTTTGATGTGATAGAAAAAGCCAAGGCAGAATTGGAAGGATCTTGTCCTGGTGTGGTTTCTTGTGCAGACATAGTGGCATTGGCAGCTAGAGAGGCTATTGTTTTGGCGAATGGACCAACATATGAAGTTCCAACAGGGAGGAGAGATGGGTTGGTTTCAAATGTTTCTCTTGCAGATGACATGCCAGATGTTAGTGATTCAATTGAGCTACTCAAGACCAAGTTTCTGAACAAGGGTCTCACAGTGAAAGACCTTGTTCTTCTCAGTGGTGCACATACAATTGGAACCACAGCATGCTTCTTTATGACTAAAAGACTGTACAACTTTTTTCCAAGTGGTGGAGGATCAGACCCATCAATCAGTCCAAATTTTCTCCCACAGTTGCAAGCAAAGTGCCCTCAGAATGGAGATGTTAATGTTAGGCTAGCCATTGACGAGGGCAGTGAGCAGAATTTTGACGTACACATTCTGAAGAACATAAAGGAAGGTTTTGCTGTGTTAGAATCTGATGCCAGACTCAATGATGACATAGCCACAAAGAATGTCATTGACTCTTACTTTTCTCCCTTGGGTCCAATGTTTGAGCCTTCTTTTGAAGCTGATTTTGTTGATTCATTCGTGAGGATGGGCCAAATTGGTGTCAAGACAGGATTCCTTGGAGAAATCAGGACAGTGTGTTCACAATTCAATTGA 819 0.4286 MAAVLLRLHFHDCFVEGCDGSILIENGPESERHAFGHQGVRGFDVIEKAKAELEGSCPGVVSCADIVALAAREAIVLANGPTYEVPTGRRDGLVSNVSLADDMPDVSDSIELLKTKFLNKGLTVKDLVLLSGAHTIGTTACFFMTKRLYNFFPSGGGSDPSISPNFLPQLQAKCPQNGDVNVRLAIDEGSEQNFDVHILKNIKEGFAVLESDARLNDDIATKNVIDSYFSPLGPMFEPSFEADFVDSFVRMGQIGVKTGFLGEIRTVCSQFN 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g02004 272 FunFam Peroxidase 104 251 - -
Vian6g02004 272 PRINTS Haem peroxidase superfamily signature 61 78 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian6g02004 272 PRINTS Haem peroxidase superfamily signature 2 16 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian6g02004 272 PRINTS Haem peroxidase superfamily signature 79 91 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian6g02004 272 PRINTS Haem peroxidase superfamily signature 126 141 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian6g02004 272 PANTHER PEROXIDASE 25-RELATED 2 265 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian6g02004 272 CDD secretory_peroxidase 1 271 IPR033905 GO:0004601|GO:0042744
Vian6g02004 272 Gene3D - 1 272 - -
Vian6g02004 272 SUPERFAMILY Heme-dependent peroxidases 1 272 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vian6g02004 272 ProSitePatterns Peroxidases proximal heme-ligand signature. 126 136 IPR019793 -
Vian6g02004 272 Gene3D Peroxidase, domain 2 104 251 - -
Vian6g02004 272 ProSiteProfiles Plant heme peroxidase family profile. 1 272 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian6g02004 272 Pfam Peroxidase 1 228 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian6g02004 272 ProSitePatterns Peroxidases active site signature. 2 13 IPR019794 GO:0004601
Vian6g02004 272 PRINTS Plant peroxidase signature 201 218 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian6g02004 272 PRINTS Plant peroxidase signature 246 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian6g02004 272 PRINTS Plant peroxidase signature 125 137 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian6g02004 272 PRINTS Plant peroxidase signature 79 94 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian6g02004 272 PRINTS Plant peroxidase signature 4 24 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian6g02004 272 PRINTS Plant peroxidase signature 60 70 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian6g02004 272 PRINTS Plant peroxidase signature 41 54 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g02004 Vian-Chr6 37145989 37148143 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g02004 2 272 Peroxidase AT1G77100 58.608 2.30e-101 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g02004 K00430 - vra:106774988 524.628