Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g02000 ATGGAAGAACCAGTGGTTTCGAGCTCAAACAGCAAGAGAGTTGGTATGAAGAAATATTTTGTTTTTCATGTAGGAGAAGATGCTACTGCTATCAAAACCAATTGGATAATGCAAGAATATCGTCTATCAGATTCTGCTTCCTCTACCAGATCATCCAAAAGAAAACCTCAACCAAAATCAGATTACAATAAATGGGTGATATGTCGTGTTTATGAGCGTAATGGAGAGGAGGACAATGGAACAGAGCTCTCATGTTTGGATGAAGTATTCTTGTCATTGGATGATGATCTTGATGAAATAAGCTTACCAAATTAG 315 0.3714 MEEPVVSSSNSKRVGMKKYFVFHVGEDATAIKTNWIMQEYRLSDSASSTRSSKRKPQPKSDYNKWVICRVYERNGEEDNGTELSCLDEVFLSLDDDLDEISLPN 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g02000 104 ProSiteProfiles NAC domain profile. 1 73 IPR003441 GO:0003677|GO:0006355
Vian6g02000 104 Pfam No apical meristem (NAM) protein 4 42 IPR003441 GO:0003677|GO:0006355
Vian6g02000 104 PANTHER NAC TRANSCRIPTION FACTOR 56 2 79 - -
Vian6g02000 104 SUPERFAMILY NAC domain 3 72 IPR036093 GO:0003677|GO:0006355
Vian6g02000 104 Gene3D NAC domain 1 77 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g02000 Vian-Chr6 37119727 37120255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g02000 6 88 NAC Transcription Factor Family AT1G61110 38.202 3.06e-13 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian6g02000 NAM 9.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g02000 - - gmx:100793989 182.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g02959 1 48605025 48606002 Vian6g02000 6 37119727 37120255 PCT