LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian6g01992	ATGGAGAGAGTAAATTCATCTTTTATGACTTCCTTTTTTGTTTGGGCAATTTTGGTGCTTGATTTGGTACTTAAGGCTTCTGGCAATCAGGAAGGCGATGCCCTGAATGCATTGAAGAGCAGCTTGCTTGATCCTAACAATGTTCTTCAAAGCTGGGATGCTACTCTTGTCAATCCCTGCACTTGGTTTCATGTTACGTGCAATAGTGATAACAGTGTGACCCGTGTTGATCTTGGAAATGCAGACCTTTCTGGTCAACTGGTTTCACAACTTGGTCAGCTCACTAATTTACAGTACTTGGAACTTTATAGTAATAATATATCTGGAAAAATTCCAGAGGAGCTTGGGAACTTGACAAACTTGGTGAGCTTGGATCTGTACTTGAACAATTTAACTGGTTCTATACCAACTACGCTGGGCAACCTTGCAAAACTACGTTTCCTGCGTCTCAACAATAATACCTTGACAGGAGGCATACCCATGACTTTGACAAATGTTTCTTCTCTGCAAGTTCTTGATCTCTCGAACAACCATCTAACAGGGAATATCCCAGTGAATGGTTCATTTTCATTGTTTACCCCCATCAGTTATCAAAATAATCCTGGCTTGATACAGCCAAAAAACGTTCCATCTCCAGCTTCTCCAACTCCACCACCAGCTTCTTCAGGAAATAGTAACACTGGAGCTATTGCTGGAGGAGTTGCTGCTGGTGCTGCTCTGTTGTTTGCAGCCCCTGCAATTGCACTTGCTTATTGGCGAAGAAGGAAACCTCAGGATCATTTCTTTGATGTTCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAACTTAAAAGGTTTTCGCTACGTGAGCTGCAAGTTGCCACTGATAACTTTAGTAACAAACACATTCTGGGTAGAGGTGGATTTGGAAAGGTTTATAAAGGACGCTTAGCTGATGGATCTCTTGTGGCAGTGAAAAGGCTTAAAGAGGAACGTACGCAGGGTGGGGAGCTCCAATTTCAAACTGAAGTGGAAATGATCAGCATGGCTGTGCATCGTAATTTGCTTCGGCTTCGTGGTTTCTGTATGACACCTACTGAACGATTGCTTGTGTATCCTTTCATGGCTAATGGAAGTGTAGCATCATGTTTACGAGAACGTCAAGAGGCTCAACCACCACTTGGTTGGCCAGAACGGAAGCGTATTGCTCTGGGTTCTGCGAGGGGGCTTGCTTATTTACATGATCATTGTGACCCTAAGATTATTCATCGTGATGTCAAAGCAGCAAATATTTTGTTGGATGAGGAATTTGAAGCAGTTGTTGGAGATTTTGGTCTAGCAAAACTTATGGATTATAAAGATACTCACGTTACTACTGCTGTACGTGGAACAATTGGACATATAGCGCCTGAGTACCTTTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTCATAACTGGACAAAGGGCTTTCGATCTAGCTCGACTTGCCAATGATGACGATGTCATGTTGCTTGATTGGGTTAAAGGACTTCTCAAAGACAGGAAATTGGAAACACTGGTAGATGCAGATTTACAGGGCAATTATATTGATGAGGAGGTAGAGCAATTAATCCAAGTGGCACTGCTATGCACACAGGGCTCTCCTATGGAAAGACCAAAGATGTCTGAAGTGGTCAGAATGCTAGAAGGTGATGGTTTGGCTGAGAAATGGGAGCAATGGCAGAAAGACGAGACCTTCCGGCAAGACTTCAACAACAACATTCATCACCCTAATGCAGCAAATTGGATAGTAGATTCAACTTCCCACATCCAACCAGATGAACTGTCAGGTCCTAGATGA	1854	0.4304	MERVNSSFMTSFFVWAILVLDLVLKASGNQEGDALNALKSSLLDPNNVLQSWDATLVNPCTWFHVTCNSDNSVTRVDLGNADLSGQLVSQLGQLTNLQYLELYSNNISGKIPEELGNLTNLVSLDLYLNNLTGSIPTTLGNLAKLRFLRLNNNTLTGGIPMTLTNVSSLQVLDLSNNHLTGNIPVNGSFSLFTPISYQNNPGLIQPKNVPSPASPTPPPASSGNSNTGAIAGGVAAGAALLFAAPAIALAYWRRRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMANGSVASCLRERQEAQPPLGWPERKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDRKLETLVDADLQGNYIDEEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKDETFRQDFNNNIHHPNAANWIVDSTSHIQPDELSGPR	617

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian6g01992	617	SMART	serkin_6	292	566	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian6g01992	617	ProSitePatterns	Protein kinases ATP-binding region signature.	298	320	IPR017441	GO:0005524
	Vian6g01992	617	SUPERFAMILY	Protein kinase-like (PK-like)	271	567	IPR011009	-
	Vian6g01992	617	FunFam	Somatic embryogenesis receptor kinase 1	27	213	-	-
	Vian6g01992	617	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	11	577	-	-
	Vian6g01992	617	Pfam	Protein kinase domain	293	564	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian6g01992	617	Gene3D	Ribonuclease Inhibitor	27	210	IPR032675	-
	Vian6g01992	617	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	415	427	IPR008271	GO:0004672\|GO:0006468
	Vian6g01992	617	MobiDBLite	consensus disorder prediction	203	226	-	-
	Vian6g01992	617	ProSiteProfiles	Leucine-rich repeat profile.	168	190	IPR001611	GO:0005515
	Vian6g01992	617	Pfam	Leucine Rich Repeat	168	184	IPR001611	GO:0005515
	Vian6g01992	617	Pfam	Leucine rich repeat N-terminal domain	29	68	IPR013210	-
	Vian6g01992	617	FunFam	Somatic embryogenesis receptor-like kinase 1	369	586	-	-
	Vian6g01992	617	Gene3D	Phosphorylase Kinase; domain 1	261	368	-	-
	Vian6g01992	617	FunFam	Somatic embryogenesis receptor kinase 1	261	368	-	-
	Vian6g01992	617	ProSiteProfiles	Protein kinase domain profile.	292	576	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian6g01992	617	SUPERFAMILY	L domain-like	30	195	-	-
	Vian6g01992	617	Gene3D	Transferase(Phosphotransferase) domain 1	369	586	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian6g01992	Vian-Chr6	37001438	37013778	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian6g01992	1	617	Receptor kinase-like Gene Family	AT4G33430	78.346	0.0	993

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Vian6g01992		Pkinase	1.1e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian6g01992	K13416		-	gmx:100800522	1116.29