Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01982 ATGGCAGCTGCAACATCTGGTGCTGTGTTAAATGGGTTGGGATCTTCCTTCTTGAGTGGAGGAAGCAGGAGCCAAACCCTTCTGGCCACTTCCATTGGAGGCAAAGTCGGTGTTGCAGTTAGTCCTAGAAGACTCATTGTGGTAGCTGCAGCAGCACCAAAGAAGTCATGGCTCCCTGGTGTTAGAGCTGGTGGCAATCTCGTCGACCCAGAATGGCTTGATGGATCGCTACCAGGTGACTTTGGTTTTGACCCACTAGGCCTGGGGAAGGACCCGGCATTCCTGAAATGGTACAGAGAAGCTGAGCTGATTCATGGGAGGTGGGCAATGGCTGCAGTTTTAGGTATCTTTGTAGGGCAGGCCTGGAGTGGAGTGCCATGGTTTGAGGCTGGAGCTGACCCCAATGCAATTGCTCCTTTTTCCTTTGGTTCTCTTTTGGGAACCCAATTGATTCTTATGGGATGGGTTGAGAGCAAGAGATGGGTGGATTTCTTCAACCCAGACTCACAGTCAGTGGAATGGGCCACTCCATGGTCAAAAACTGCTGAGAACTTTGCCAATGCTACTGGTGAACAAGGGTACCCAGGAGGCAAATTCTTTGACCCTTTGGGCTTCGCTGGCACTCTCAAGGATGGAGTTTACATCCCGGATACAGAGAAGCTGGAAAGATTGAAATTAGCTGAGATTAAGCATGCCAGGATTGCTATGTTGGCCATGCTGATTTTCTACTTTGAGGCTGGACAAGGAAAGACCCCCCTAGGCGCACTTGGCTTGTAA 777 0.5032 MAAATSGAVLNGLGSSFLSGGSRSQTLLATSIGGKVGVAVSPRRLIVVAAAAPKKSWLPGVRAGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADPNAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01982 258 Gene3D Chlorophyll a/b binding protein domain 70 257 - -
Vian6g01982 258 Pfam Chlorophyll A-B binding protein 70 246 IPR022796 -
Vian6g01982 258 SUPERFAMILY Chlorophyll a-b binding protein 67 258 - -
Vian6g01982 258 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 54 256 IPR001344 GO:0009765|GO:0016020
Vian6g01982 258 FunFam Chlorophyll a-b binding protein, chloroplastic 70 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01982 Vian-Chr6 36898912 36900007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01982 1 258 Chloroplast and Mitochondria Gene Families AT1G15820 81.923 7.07e-153 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01982 K08917 - gmx:100527463 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01982 6 36898912 36900007 Vian6g01982 6 36898912 36900007 ECH
Vian1g02974 1 48800816 48801798 Vian6g01982 6 36898912 36900007 PCT