Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01980 ATGGAGGGACGGAGTTTGTGCTCACCGATGTTTCTTTTGCTTGCTTTGGCCACTCTGAACGTTGTGCATGGCCAAGGGACGCGTGTAGGGTTCTATGCTAGAACATGTCCTCGGGCTGAGTCCATTGTTAGGTCCACAGTTCAATCCCACGTGAGGTCCGATCGTAGTTTAGCGGCTGGGCTGCTTCGGATGCACTTTCACGATTGCTTTGTACAAGGTTGTGACGGTTCTGTTCTCATTGCCGGTGCTGGCACCGAGAGAACAGCATTCGCAAACCTTGGTTTAAGAGGGTACGAGGTTATTGACGATGCGAAAACGCAGCTCGAGGCTGCATGCCCCGGTGTTGTGTCTTGTGCTGATATCCTTGCTCTTGCTGCTCGTGATTCCGTTTTTCTGAGTGGTGGACTGAGTTGGCAAGTGCCTACTGGACGCAGAGATGGGCGAATATCACAGGCTTCTGATGTGAGTAACTTGCCTGCTCCTTTTGACTCTGTTGATGTTCAGAAACAAAAGTTCACAGCAAAGGGACTCAACACTCAAGACCTCGTCACCCTTGTTGGTAATTACACTTATGACTTTCTAAGATCATTGTGCCCGCAAAACGGCGGTGATTCAAACCGAGTAGCTCTTGATACCGGTAGTGAAATCAGATTTGACACATCATTCTTTGCCAATTTGAGAAATGGGCGTGGAATTCTGCAGTCTGATCAAGCGCTTTGGAACGATCCTTCCACCAAGTCTTTTGTACAGGGTTACTTGGCCTCCAAAGCCTCGTTTTTCAATGTGGAATTTGCAAAATCTATGGTGAAGATGAGCAACATCGAGTTGAAGACTGGGACCGATGGTGAAATTCGCAAGATATGTTCTGCCTTTAACTAG 879 0.4801 MEGRSLCSPMFLLLALATLNVVHGQGTRVGFYARTCPRAESIVRSTVQSHVRSDRSLAAGLLRMHFHDCFVQGCDGSVLIAGAGTERTAFANLGLRGYEVIDDAKTQLEAACPGVVSCADILALAARDSVFLSGGLSWQVPTGRRDGRISQASDVSNLPAPFDSVDVQKQKFTAKGLNTQDLVTLVGNYTYDFLRSLCPQNGGDSNRVALDTGSEIRFDTSFFANLRNGRGILQSDQALWNDPSTKSFVQGYLASKASFFNVEFAKSMVKMSNIELKTGTDGEIRKICSAFN 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01980 292 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian6g01980 292 PRINTS Plant peroxidase signature 266 279 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian6g01980 292 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian6g01980 292 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian6g01980 292 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian6g01980 292 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian6g01980 292 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian6g01980 292 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian6g01980 292 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian6g01980 292 PRINTS Haem peroxidase superfamily signature 211 226 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian6g01980 292 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian6g01980 292 PANTHER PEROXIDASE 25-RELATED 192 285 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian6g01980 292 Gene3D - 32 158 - -
Vian6g01980 292 Gene3D Peroxidase, domain 2 193 271 - -
Vian6g01980 292 CDD secretory_peroxidase 28 291 IPR033905 GO:0004601|GO:0042744
Vian6g01980 292 SUPERFAMILY Heme-dependent peroxidases 28 292 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vian6g01980 292 FunFam Peroxidase 30 171 - -
Vian6g01980 292 Gene3D - 272 292 - -
Vian6g01980 292 Pfam Peroxidase 43 254 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian6g01980 292 Gene3D Peroxidase, domain 2 159 190 - -
Vian6g01980 292 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Vian6g01980 292 ProSiteProfiles Plant heme peroxidase family profile. 26 292 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01980 Vian-Chr6 36892511 36893918 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01980 4 292 Peroxidase AT5G64120 57.622 1.34e-124 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01980 K00430 - gmx:100783523 478.404