Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01967 ATGGATTGTTTCTGTTGCTTCCATCAGGTGGTTGGAGGACGCTCTTCATGTAGCTCCGGCAAGGGGAGGAGCCATCTGTGGCCAGTTAAGTATGGTTTTAGCCTAGTTAAAGGGAAAGCAAACCACCCAATGGAGGACTATCATGTAGCAAAAATTGTGAAATGCGGAGGGCAAGAATTAGGACTTTTTGCTATATATGATGGACACTTGGGAGACAGTGTGCCAGCCTATTTACAAAAGCATCTCTTTTCTAATATCTTGAAGGAGGAGGACTTCTGTACCGATCCTAGAAATTCTATCATTAAAGCTTACGAGACAACAGATCAGGCCATTCTTTCTCACAGTTCTGATTTGGGGCGAGGAGGATCTACTGCAGTCACTGCAATTCTTATTAATAATCAGAACTTATGGGTCGCAAATGTTGGAGATTCACGAGCAGTTCTGTCAAGGAAGGGGGTGGCCATTCAGATGACCATTGATCATGAGCCAAATACTGAGAGGGGCTTCATCGAGAACAAAGGAGGCTTTGTCTCAAACATGCCAGGAGATGTTGCAAGAGTGAATGGGCAGCTTGCAGTTTCTCGAGCATTTGGTGACAAAAATCTGAAATCACACTTGCGATCTGATCCTGATGTACATCATTTTGATATTAACTCAGATGCTGAGCTTTTGATACTTGCTAGTGATGGTCTTTGGAAGGTAATGGCAAACCAAGAAGCAGTTGATATTGCTAGAAGGATAAAAGATCCACAAAAGGCAGCAAAAAAGCTAATTGCGGAGGCATTGGACAAAGACAGCAAGGATGATATTTCGTGCATTGTAGTTCGTTTCAAGGGTTGA 840 0.431 MDCFCCFHQVVGGRSSCSSGKGRSHLWPVKYGFSLVKGKANHPMEDYHVAKIVKCGGQELGLFAIYDGHLGDSVPAYLQKHLFSNILKEEDFCTDPRNSIIKAYETTDQAILSHSSDLGRGGSTAVTAILINNQNLWVANVGDSRAVLSRKGVAIQMTIDHEPNTERGFIENKGGFVSNMPGDVARVNGQLAVSRAFGDKNLKSHLRSDPDVHHFDINSDAELLILASDGLWKVMANQEAVDIARRIKDPQKAAKKLIAEALDKDSKDDISCIVVRFKG 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01967 279 CDD PP2Cc 29 277 IPR001932 -
Vian6g01967 279 Gene3D - 26 279 IPR036457 -
Vian6g01967 279 ProSiteProfiles PPM-type phosphatase domain profile. 30 277 IPR001932 -
Vian6g01967 279 SUPERFAMILY PP2C-like 23 278 IPR036457 -
Vian6g01967 279 FunFam Probable protein phosphatase 2C 39 22 278 - -
Vian6g01967 279 PANTHER PROTEIN PHOSPHATASE 25 277 IPR015655 GO:0004722|GO:0006470
Vian6g01967 279 SMART PP2C_SIG_2 41 277 IPR001932 -
Vian6g01967 279 SMART PP2C_4 26 275 IPR001932 -
Vian6g01967 279 Pfam Protein phosphatase 2C 39 270 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01967 Vian-Chr6 36793035 36795648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01967 1 278 PP2C-type Phosphatase Gene Family AT1G22280 70.035 7.39e-140 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01967 K17506 - gmx:100787659 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g02996 1 49232131 49239532 Vian6g01967 6 36793035 36795648 PCT