Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01963 ATGGAAGCCGCAGCGTTGAAAGTGGAGTCACTTGCGTGCATAGACTCAACCACTCTCTCTCACTCCGAGCTTCTCGCCCTTTCTCTCTCCTCTCTCTGCGCCTTCGACCTTCGCGCCACCAATGACCTCGTCACACCCAAGATCGACCCCGCGCTCTTCAACGAGAGCGCCGGCTCCCGCCGCCAGACCTACTCCCGCCCCCAGTCCTCCCCGACGGGCCGCCGCCGCCGCCTCGCCGGCCTACTGCCCGCCCCCAAGCCCCCTCCCCTCCCCGCTCACGACCCCGAGAACGCCGAAAACCGCCTCATCATCGACTACCTCAAACAACTCATCCGAGAGGACCCCAAGTTCGACCAGGTCCACCTCGCTTCCCCTTCCCTTCCCCCACCCAATGTCAAGCGCAAGCGAGGCCGCAAACCCAAGCTCAAACTCCACCTGGAACACTGCTACCGCGGAATCGACATTCTTAACCGGAACGGCGTCGCCGTTGATCTCTCGCAGTTGGCCACCTCCCAAGACCCCTTCGCCGATGAGCTCAAGAGGCGCACAGAGGGTTTGAGCAGCGAAGAAGAGCTGTTAGGGTTTTTGAGGGATTTGCCTGGCCAATGGGGGAGCCGTAGGAAGAAACGCAGGATTGTTGATGCCTCGGATTTCGGCGATGTGTTGCCGCTCAGTTGGAAGATTCTTCTCGGTTTGAAGAGGAAGGACGGTCGTGCGTGGATCTATTGCCGCAGATACATTAGGGCTTATCCTATATTTGATATTCCGCCGTGCAGCCCTAGTGGACAGCAGTTTGTGTCTTGCAAAGAGGTTTCTTCATATTTACAGTCTCTTCTGGGTAATGGTGATGGGCAATCGCAAAGTAGTCGCAGGAGTGAAAATGTAGTGCAGGAACAGATCGTGCCTGCTGAAAATTCTGCTGGTGTCACTCCTGAACGTCAAGATCAGAGACAGATTGTTGCCGTGAACGCGGAGGTGCCTGGGTTATTTGCGGGTGCTCGGGAAAGAGTCAAGGAGGTTGCCTTGTTGGGAATTGAAAATCTTGCAGATGTGCAGATTCAAGATCTGTTTGAGTGTCGCAAGTGCAATATGAGTTTTGACGAGAAGGATTCGTACTTGCAGCACCTGTTGTCAGTTCACCAGAGGACGACAAGGCGGTACCGGCTTGGTTCCTCTGTTGGAGATGGAGTTATAATTAAAGATGGGAAGTTTGAGTGCCAGTTCTGCCATAAGGTGTTTCTGGAAAGGCGTCGTTACAATGGTCATGTGGGGATTCATGTTAGGAATTATGTGAGGAGGGTAGAAGATTCACCAGGTCAGATTAATGTCCAGAGGACAGATGACAAGTCTCCAGTAAGGGAGGACGTGCCATTAAGGATATCTAAGATGGATGCCCTCATTGAAATTGCTCAAAACTCTATTATGGAGGGTTGTGTCACGGAACCCCATCATTTAGCTAAACTGAATGGGATTCCTGCTTCGGATGTTGCTGTTGGTTACTTGGACCAAGATGGAAACTCTGAGGCTCCAATCAGTGAAAAGCAGATGGAAGATAGCTTGACTAAGAAAAATGTGGATCATCATGGAATGGATGGAAAGGTAGAGGAAGTTGATAATGATAACCGTGTGATAGATGTAAAAATGGTTACTTTTCTTGATAACATGGGTTTGTTATCTGTAAATAAGCAAGATGTTAAAGCATCCGAGACTTCTGAAGTAAAAGATGATGTGGAATTGACTATTGAGGAACTGGATCAATCTGGGATTGATTTGGATGGTGTTTCTGAAGTTCATTTATCTGAACTTAACATGATACCAGAATCTGAAAAGGGTGAAAATTCTGAATCTTCTAATGCTAAAGTTCAGTTTAAACCTGATGAAGGCATTAGTAACAAGAGTGATTTGGAATTTGGTTTAAATTGCTTGAAGGATGTACCTGTTACCGTTAGCACTGATGTCCAAGAGATGGTAATGGCAGGTTCTGAAGAAAATGTGGTACATTCTAGGGCTTTTAACTCCTCTATATCCACAGAACAACCTATGGATTGTTTGCCTGCATTCAGCTCTGATAAGGGAGGAAAACAGTTTTGCCGTCTTGAAAATGAACATGATAACGTGAAGGGTCTCGAGGAATTGAGGTTTGATGAAATAGATAGTGTTGATTATGATTTTGCAAGGATTCAGGATTCTCCTTCTCCGCCTGCTGTATCAGCTGAATTGGCCAATGACGCAGTGATGGGAGAGACGTTTTTATCCTCAGTTCAGTTTGAATCACAGCTTACAACTGTATGTGTATGGTGTGGAATAGAGTTTAACCATGACGCTGTCAATTCTGAAATACAACCAGATTCTGTTGGATTCATGTGTCCAGCTTGTAAAGCAAAAATCTCTGGTCAAATCAACGTGTTGGACTGTGAATCGCCAAATGCTGGCTGTCTATAG 2442 0.4775 MEAAALKVESLACIDSTTLSHSELLALSLSSLCAFDLRATNDLVTPKIDPALFNESAGSRRQTYSRPQSSPTGRRRRLAGLLPAPKPPPLPAHDPENAENRLIIDYLKQLIREDPKFDQVHLASPSLPPPNVKRKRGRKPKLKLHLEHCYRGIDILNRNGVAVDLSQLATSQDPFADELKRRTEGLSSEEELLGFLRDLPGQWGSRRKKRRIVDASDFGDVLPLSWKILLGLKRKDGRAWIYCRRYIRAYPIFDIPPCSPSGQQFVSCKEVSSYLQSLLGNGDGQSQSSRRSENVVQEQIVPAENSAGVTPERQDQRQIVAVNAEVPGLFAGARERVKEVALLGIENLADVQIQDLFECRKCNMSFDEKDSYLQHLLSVHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRRVEDSPGQINVQRTDDKSPVREDVPLRISKMDALIEIAQNSIMEGCVTEPHHLAKLNGIPASDVAVGYLDQDGNSEAPISEKQMEDSLTKKNVDHHGMDGKVEEVDNDNRVIDVKMVTFLDNMGLLSVNKQDVKASETSEVKDDVELTIEELDQSGIDLDGVSEVHLSELNMIPESEKGENSESSNAKVQFKPDEGISNKSDLEFGLNCLKDVPVTVSTDVQEMVMAGSEENVVHSRAFNSSISTEQPMDCLPAFSSDKGGKQFCRLENEHDNVKGLEELRFDEIDSVDYDFARIQDSPSPPAVSAELANDAVMGETFLSSVQFESQLTTVCVWCGIEFNHDAVNSEIQPDSVGFMCPACKAKISGQINVLDCESPNAGCL 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01963 813 ProSitePatterns Zinc finger C2H2 type domain signature. 406 426 IPR013087 -
Vian6g01963 813 ProSiteProfiles Zinc finger C2H2 type domain profile. 404 431 IPR013087 -
Vian6g01963 813 MobiDBLite consensus disorder prediction 54 97 - -
Vian6g01963 813 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 4 617 IPR037472 -
Vian6g01963 813 ProSiteProfiles Zinc finger C2H2 type domain profile. 357 385 IPR013087 -
Vian6g01963 813 MobiDBLite consensus disorder prediction 56 72 - -
Vian6g01963 813 ProSitePatterns Zinc finger C2H2 type domain signature. 359 380 IPR013087 -
Vian6g01963 813 SMART c2h2final6 404 426 IPR013087 -
Vian6g01963 813 SMART c2h2final6 357 380 IPR013087 -
Vian6g01963 813 Gene3D Classic Zinc Finger 346 429 - -
Vian6g01963 813 MobiDBLite consensus disorder prediction 279 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01963 Vian-Chr6 36770631 36774485 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian6g01963 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01963 - - var:108341719 1402.11