Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01954 ATGATATATGAAAATACTTGGATAAATTTTAGACATTCCGAGTTTGGTATGTCACAAAATGAAAATGATGACTTCCAGTCAATGGTCTCCTTTCTCGAACGCCACCATTCCGACCAGTTCCACTCCATTGTTTCTTCTCCCGATTCCGACCTTCACTTCCCTCTTTTCGTCGATTTTGCTGAACTGTTTGAAGAGGTATATCGCGTTGCTTGTCTCCTCTTGTTCCAACCCAATACCTATTTGCGAGTATTCGACGCAGCTGCCCTTTCGGCCCAGAAAACCGTATTGGCGGATTGTAAGAAAGGGGTGGAGAAAAAGTCCATTCATGTTCGTATTAACACCTGTGGCTCAGTCCTTGAATTCCCTGAAACTTTTCCAAGCATTGGACGTGTTCGCGTGCAGCACCATGGAATTCTTCTCACTCTCAAAGGGATAGTGATTAGGTCTGGAGCAATGAAGATGCATGAAGGGGAGAGGACGTACATGTGTCACAAATGCAAAAACAGCTTCCCAGTACATCCTTTGGTGGAAGCTCGAAACTCCATATCATTACCTTCCATTTGCCCATTTCAGAATTCCAAGCCCTGTTCCGGCACGAAATTTCAGTATGTAGAGAACACTATAGTATGCCATGATTATCAGGAGATAAAAATTCAAGAAAGTACACAGGTGCTAGGTGTTGGGGCAATTCCTCGTTCAATTCTTGTCATCTTAAAGGATGACCTCGTTGATGTTGTTAAAGCTGGAGATGATGTGATCGTCTCTGGTGTCTTAACAGCAAAATGGGCTCCAGAGTTGAAGGATGTGCGTTGTGACCTTGATCCTGTATTAATTGCCAACAATGTAAGGAGAGTCAATGAACTGAAGTCAGAAATTGATGTTTCTGACGATGTTGTTATGAAATTCAAGCAGTTTTGGGCTCACTTCAAAGATTCACCTCTAAAAGGGAGGAATGCTATTCTGCGAGGAATTTGCCCGCAAGTATTTGGCCTTTTCACTGTCAAGTTGGCTGTTGCATTAACTCTCATTGGAGGTGTGCAACATGTCGATGCTTCTGGAACTAGGATACGAGGGGAGTCCCACTTACTCTTGGTTGGTGATCCCGGCACCGGAAAATCTCAGTTTCTGAAATTTGCTGCAAAATTGAGTAACCGCTCTGTTATTACCACTGGATTGGGAAGCACAAGTGCTGGACTGACTGTTACTGCAGTGAAGGATGGAGGGGAATGGATGTTGGAAGCTGGAGCTCTTGTTTTGGCAGATGGAGGATTGTGTTGCATAGATGAATTTGATAGCATGAGGGAGCATGATAGAGCAACAATACATGAAGCCATGGAGCAGCAGACAATAAGTGTTGCCAAGGCTGGTCTTGTAACAACACTCAGCACTAGAACAACTGTATTTGGTGCCACAAATCCCAAGGGACAGTATGATCCTGATCAACCTCTGTCTGTCAATACAACACTCTCTGGCCCTTTATTAAGCAGGTTCGATATTGTCCTTGTTCTATTGGATACAAAAAATCCTGATTGGGATGCAGTGGTTTCATCTCATATTCTTTCTGAGGCAGAATCGGATAGCACCACTAATGACGAAGATCTCGTAAATAGCTGGCCACTTGCTACACTCAAGAGGTACATACAATATGTGAAAGAACATTTCAGACCAGTCCTAACGAGAGAGGCTGAAATAGTTATATCCAGCTATTATCAACTTCAAAGGAAATCTGCAACTCATAATGCAGCTAGAACAACTGTCCGCATGTTGGAAAGTTTGATACGCCTAGCACAAGCCCATGCAAGACTGATGTTCAGAAATGAGGTGACTCGACTAGATGCCATAACAGCTATTTTATGCATAGAATCATCCATGACTACCTCAGCTATCGTGGATTGCATTGGGAATGCTTTGCATTCCAATTTTGCTGACAACCCTGATCAGGAATGTATCCTTGCTGTCATTCTTTGCATAAATTAG 1977 0.4315 MIYENTWINFRHSEFGMSQNENDDFQSMVSFLERHHSDQFHSIVSSPDSDLHFPLFVDFAELFEEVYRVACLLLFQPNTYLRVFDAAALSAQKTVLADCKKGVEKKSIHVRINTCGSVLEFPETFPSIGRVRVQHHGILLTLKGIVIRSGAMKMHEGERTYMCHKCKNSFPVHPLVEARNSISLPSICPFQNSKPCSGTKFQYVENTIVCHDYQEIKIQESTQVLGVGAIPRSILVILKDDLVDVVKAGDDVIVSGVLTAKWAPELKDVRCDLDPVLIANNVRRVNELKSEIDVSDDVVMKFKQFWAHFKDSPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTRIRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGQYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPDWDAVVSSHILSEAESDSTTNDEDLVNSWPLATLKRYIQYVKEHFRPVLTREAEIVISSYYQLQRKSATHNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFADNPDQECILAVILCIN 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01954 658 ProSiteProfiles MCM family domain profile. 316 519 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian6g01954 658 SUPERFAMILY Nucleic acid-binding proteins 52 266 IPR012340 -
Vian6g01954 658 Gene3D - 155 211 - -
Vian6g01954 658 SMART AAA_5 358 507 IPR003593 GO:0016887
Vian6g01954 658 PRINTS Mini-chromosome maintenance (MCM) protein family signature 493 501 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian6g01954 658 PRINTS Mini-chromosome maintenance (MCM) protein family signature 443 456 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian6g01954 658 PRINTS Mini-chromosome maintenance (MCM) protein family signature 415 429 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian6g01954 658 PRINTS Mini-chromosome maintenance (MCM) protein family signature 357 372 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian6g01954 658 Pfam MCM AAA-lid domain 542 623 IPR041562 -
Vian6g01954 658 CDD MCM9 319 623 - -
Vian6g01954 658 Pfam MCM OB domain 130 259 IPR033762 -
Vian6g01954 658 SMART mcm 124 625 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vian6g01954 658 Gene3D - 291 629 IPR027417 -
Vian6g01954 658 FunFam Probable DNA helicase MCM9 294 628 - -
Vian6g01954 658 Pfam MCM P-loop domain 318 521 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian6g01954 658 Gene3D - 131 260 IPR012340 -
Vian6g01954 658 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 23 629 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vian6g01954 658 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 633 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01954 Vian-Chr6 36696409 36706586 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01954 22 651 Core DNA Replication Machinery Family AT2G14050 74.686 0.0 984
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01954 K10738 - gmx:100776255 1079.32