Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01946 ATGGGTCTGCGTCATCTCTCAAACTTGATGACGCCATTGCCAGAACTCTGTGCCTCACTTTGTCATGTGAGAAAGTCCGAGCCTTGTTCATCAGATTGCAAAGTTTGCCTCAGGATCTGCCTCACCAATCCCGAAAACCCTAATTATGATTCTCCTCCACCGCCGCCGCCACAACTTCCCCCTTTCATTCTAAATAACGACGGCGCAGATGAATCAAGCAGCCACAAAATAGCCACCTATTTGTTCCTTGCTCTTGCTATTCTAACCGTTGCTTTCTTTGTCGTTTGTTGTCGCACCATCTATACCAGGTTCAGCTCGAGGAGGAGGGAATCATCAAGGCACCAGCCAGAGAACACCGCCGATGATGATTTTGTTGATGAAGAGCATGGACCTGTGGTGGATCACCCCATATGGTATATCCGCACCCTCGGCCTTCAGCAATCGATTATCAATGCCATCACAGTTTGTAGGTATAAGAAAGGAGAGGGCTTGATTGAAGGAACCGAGTGTGCGGTTTGCTTGAGTGAGTTTGAAGAGGATGAAAATCTCAGACTTTTGCCTAAATGCTATCATGCTTTTCATTTACCCTGTATTGATACCTGGCTTAGGTCTCATACCAACTGTCCCATATGCCGGGCTCCCATTGTTTCTGACCTTGCAACCGCTAGGTCGGAGTCTAGTTTTGTTGATTCAAATTCCTTTGGACATACCCATGTGGAAATTTTGGAAAATAGTGCTCCTGATTCTGAATTAGGAAATAGGGCAGAGGAAGAGGGCCAAGTGGAGGCTGAAGATGGATTTAGGGTTTGTGAAACTGAAACCCCAGTTGAAGAGGTGCCAGGCATTCTTCCTAGAAGATCTGTTTCTCTGGATTCCTTTTCTGTTGCAAATATTAATCGTGCTCTTGCAACATTGGGATCTAATGCTAACTCAAAAAGAGTGCTGGGAGGCGTGGATGATGCTGCTGCTTCTTCTTCTTCTTCTTCTTCAAAGGTGGGTTCTGGAAGCGATTTGGCAACCACTTCCAAAGGCAGCTCCTCTTTCAGGTTAACTAGGTATCTGCCGGGTGCTCCTGGTTCTTCAATGAAAAGGTCACAGTCCTATAATGGAAAGTACCTTCTGTCCTGGTACGGTCGCAATCAGAAGAAGCCAAATGCTCCTCTGAGAAGCTTTTAG 1176 0.4626 MGLRHLSNLMTPLPELCASLCHVRKSEPCSSDCKVCLRICLTNPENPNYDSPPPPPPQLPPFILNNDGADESSSHKIATYLFLALAILTVAFFVVCCRTIYTRFSSRRRESSRHQPENTADDDFVDEEHGPVVDHPIWYIRTLGLQQSIINAITVCRYKKGEGLIEGTECAVCLSEFEEDENLRLLPKCYHAFHLPCIDTWLRSHTNCPICRAPIVSDLATARSESSFVDSNSFGHTHVEILENSAPDSELGNRAEEEGQVEAEDGFRVCETETPVEEVPGILPRRSVSLDSFSVANINRALATLGSNANSKRVLGGVDDAAASSSSSSSKVGSGSDLATTSKGSSSFRLTRYLPGAPGSSMKRSQSYNGKYLLSWYGRNQKKPNAPLRSF 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01946 391 SMART ring_2 170 211 IPR001841 -
Vian6g01946 391 Pfam Ring finger domain 169 212 IPR001841 -
Vian6g01946 391 MobiDBLite consensus disorder prediction 320 343 - -
Vian6g01946 391 CDD RING-H2_EL5-like 169 212 - -
Vian6g01946 391 MobiDBLite consensus disorder prediction 321 343 - -
Vian6g01946 391 SUPERFAMILY RING/U-box 164 218 - -
Vian6g01946 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 219 IPR013083 -
Vian6g01946 391 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 71 218 IPR044675 -
Vian6g01946 391 ProSiteProfiles Zinc finger RING-type profile. 170 212 IPR001841 -
Vian6g01946 391 FunFam RING-H2 finger protein ATL54 145 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01946 Vian-Chr6 36655043 36656218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01946 77 216 C3H Transcription Factor Family AT1G72220 57.042 6.44e-48 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01946 - - vun:114186636 679.478