Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01935 ATGGCAAGAAAGAAGATACCGATCAAGAAGATCGACAACATAAACGCGAGGCAAGTAACATTCTCGAAGAGGAGAAAAGGTCTTTTCAAGAAGACTCAGGAACTGTCAACTCTCTGTGATGCTGAGATTGCTCTCATAGTCTTTTCCTCAACCAGCAAGCTCTTTGAGTACGCCAGTTCAAGCATGCAACAAATAATTGAAAGGCGTAATCAGCATTCAGGTGTTCAAGGATCAGACATTGCATCCACTGGAAAACAGCTTGGAAGTAACTCTTTTGACATGCTGCACAAGGAAATAGAAGATAAGACTCATGAACTGTGTCAGTTGAACGGACAAGACTTGCAAGGATTGACAATACAAGAGTTGCAGAAACTGGAGGAACTTCTCCAAAAACGTTGGATCACTATTTCAAAAATTAAGGAAGAAAAAATGACACAAGAGATCAACAGTCTTAAAACAAAGGAAGCCGAACTTACAGAAGAGAACCAGAAACTGAAGCAGAACTTTTATGAACAGAAGTTGGTTCGAGAACAATGTTATGAGTCAATCACTAGCAGTTCGTCCGATTTTCCTCCAGACAATGGTAGTTCTGACACATCTCTCAAGTTGGGGCTGTGTTTATTTGAATGA 630 0.4032 MARKKIPIKKIDNINARQVTFSKRRKGLFKKTQELSTLCDAEIALIVFSSTSKLFEYASSSMQQIIERRNQHSGVQGSDIASTGKQLGSNSFDMLHKEIEDKTHELCQLNGQDLQGLTIQELQKLEELLQKRWITISKIKEEKMTQEINSLKTKEAELTEENQKLKQNFYEQKLVREQCYESITSSSSDFPPDNGSSDTSLKLGLCLFE 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01935 209 SUPERFAMILY SRF-like 3 76 IPR036879 GO:0003677|GO:0046983
Vian6g01935 209 FunFam Transcription factor, MADS-box 13 82 - -
Vian6g01935 209 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vian6g01935 209 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Vian6g01935 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vian6g01935 209 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vian6g01935 209 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian6g01935 209 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Vian6g01935 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian6g01935 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vian6g01935 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vian6g01935 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vian6g01935 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vian6g01935 209 Pfam K-box region 89 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian6g01935 209 Coils Coil 141 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01935 Vian-Chr6 36573994 36582718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01935 1 205 MADS-box Gene Family AT2G22540 46.186 1.25e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vian6g01935 K-box 6.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01935 - - gmx:100779453 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03027 1 50041248 50047276 Vian6g01935 6 36573994 36582718 PCT