Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01920 ATGAGTTCCAAAGGTGTTGATGAGCAGTGCCTGGGATGGGCGGCAAGAGATGCATCCGGAGTTCTATCACCTTACAAATTCAGTCGCAGGAATCTTGGGAACGAAGATGTTCATATTAAAATTACACACTGTGGTGTTTGCTACGCTGATGTAATTTGGACAAGGAATAAACATGGTGACTCAAAGTATCCTGTTGTGCCTGGTCATGAAATTGCTGGGATTGTGACAAAGGTTGGCCCTAATGTCCACCGTTTCAATGTTGGTGACCATGTTGGAGTGGGGACTTATGTCAACTCGTGTAGGGATTGTGAGTATTGTAACGAAAAACAAGAAGTTCTTTGTACCAAGGGATCGGTCTTCACTTTTAATGGTGTTGATTTTGATGGTACAATAACAAAAGGAGGATACTCAAGTTATATAGTAGTCCATGAGAGGTACTGCTTCACGATACCAAAAGGCTATCCATTGGCTTCAGCAGCTCCTTTGCTTTGTGCTGGAGTTACTGTTTATTCTCCGATGGTGCGCCACAAGATGAATCAACCTGGAAAATCTCTTGGGGTGATTGGTCTTGGTGGCCTTGGTCATATGGCAGTGAAATTCGGAAAGGCATTCGGTTTGAGTGTAACAGTTTTTAGCACTAGTTTGTCCAAGAAAGAAGAGGCACTGACCTTGCTTGGTGCAGACAAATTCGTTGTTTCATCTAATCAAGAGGAAATGAAGGCGTTGGCTAAATCGCTGGACTTTATAATCGACACAGCATCTGGTGATCACCCATTTGATCCTTACATGTCACTTTTGAAGCCATATGGTGTTTTTGTCCTAGTTGGTTTCCCTAGTGAAATCAAATTCAGCCCTGCAAGCCTTAATATAGGATCAAAGACTTTCGCCGGAAGCGTTACAGGTGGTACAAAAGATACACAAGAGATGATTGACTTCTGTGCTGCAAACGATATTCACCCAAGGATAGAGGTGATTCCAATCGAGTATGTCAATGAAGCTCTTGAGAGGCTCGTAAATAGAGACATCAAATACCGGTTTGTAATAGATATTGAGAACTCCCTAAAAGAAAATTAA 1074 0.4218 MSSKGVDEQCLGWAARDASGVLSPYKFSRRNLGNEDVHIKITHCGVCYADVIWTRNKHGDSKYPVVPGHEIAGIVTKVGPNVHRFNVGDHVGVGTYVNSCRDCEYCNEKQEVLCTKGSVFTFNGVDFDGTITKGGYSSYIVVHERYCFTIPKGYPLASAAPLLCAGVTVYSPMVRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLSVTVFSTSLSKKEEALTLLGADKFVVSSNQEEMKALAKSLDFIIDTASGDHPFDPYMSLLKPYGVFVLVGFPSEIKFSPASLNIGSKTFAGSVTGGTKDTQEMIDFCAANDIHPRIEVIPIEYVNEALERLVNRDIKYRFVIDIENSLKEN 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01920 357 FunFam probable cinnamyl alcohol dehydrogenase 13 184 - -
Vian6g01920 357 Gene3D - 13 350 - -
Vian6g01920 357 CDD CAD1 12 349 IPR047109 GO:0016616
Vian6g01920 357 PANTHER ALDEHYDE REDUCTASE 8 353 IPR047109 GO:0016616
Vian6g01920 357 Gene3D - 165 320 - -
Vian6g01920 357 SMART PKS_ER_names_mod 20 348 IPR020843 GO:0016491
Vian6g01920 357 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 185 212 IPR029752 -
Vian6g01920 357 Pfam Alcohol dehydrogenase GroES-like domain 35 149 IPR013154 -
Vian6g01920 357 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Vian6g01920 357 SUPERFAMILY GroES-like 16 183 IPR011032 -
Vian6g01920 357 FunFam Cinnamyl alcohol dehydrogenase 165 320 - -
Vian6g01920 357 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 318 IPR036291 -
Vian6g01920 357 Pfam Zinc-binding dehydrogenase 192 314 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01920 Vian-Chr6 36456605 36458387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01920 2 355 Monolignol Biosynthesis Gene Families AT1G72680 76.554 0.0 558