Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01919 ATGGGGAATGGAGGTTTTAGCACACTGACTCTTATCTTGTGCTATGCAATGGCAACCGTTTCATTCCTCCCTTCTACAAATACACTATCGTGTAGCTACCTCAAGTTCTGGGGAAATGATGCATGGCTGCAACTGCGAGGAGACGCAGAAGTTTCAGCTTCAGAAATCCAAGTCACATCTAACAGGGAAGGAAAGAACAACAGTTACAGTGTTGGACGTGTCACACCTGAATTAACGATGCATCTCTGGGATAAGAGTTCTGGGAAACTTGCAGACTTCACTACCCACTTTTCGTTCTCTGTTTATTCAAATGAAATTCAGTTTGGAGATGGGTTTGCATTCTTTTTGGCGGATCCTGGGCTTCCCCTTTTGAATAACATCACGGAAGGTGGTGGTCTTGGCCTTGTGGATGGTGACAGAGTGTTGAACTCGACGCAACACTCATTTGTGGCAGTGGAGTTTGACACCTTCCAAAATCCATGGGACCCCGAAGACCCTCATGTAGGTATGAATTTCAACTCTATGAAGTCCAATGTAACTGCATCATGGTTAGCTATTATGTCACAAGATGTGGTTTATAATTGTAGCATTGAGTACAATTCCACCACTTTTTGTTTAAGTGCTTCTTTCACTGGCTACGATTACAAAAAATATGGTCGAATACAAAATAGCCTTTCGTACCATGTTGATTTGAGAAAGCACTTACCAGAGAGGGTCATGGTTGGCTTCTCCGCAGCTGCGGGATATTATTTTGAGGATCATATTCTGAAGTCATGGTCATTTAGTTCAGGCTTAGAAATAGAAATTGGTGATACTTCCGGTGATGATAATAAAGCAGTTGAGTGGGTAGGAATTGGGATAGGTTTGGTGGTTTTCTTAGGATTGGCTTGTTTTCTGATGTGGAGAAGGATAAAAGGGAAGGAAAAAGTGTTGGAAATTGATCTAAAAATGGACGATGAGTTCCAAAAGGGAATAGGACCCAAGAGGTTTCCATACAATGAACTGGAAAGTGCAACGAGTAAATTTTCAGAGTCGGAGAAGCTTGGACAAGGAGGCTTCGGTGGCGTGTATAAAGGTTTTCTGAAGGATTTAAACTCCTACGTTGCCATCAAGAGGGTATCGAGAGAATCAAAGCAGGGGGGGTTGGTGGATCATGAAAAGGGGTCGCAAACAACGTTAATAGCTGGAACAAGGGGATACATTGCACCAGAATATGTGACTACAGGAAAAGCTTATAAGGAATCTGACATATACAGTTTTGGTGTTGTGTTATTGGAGATAGCTAGTGGAAGAAAAGCCATTGATCTAAAGGCACAGGAGGGGAAGGTATCAATAGTAGAGTGGGTTTGGGAGATGTATGAATTGGGAGAGATATTGAAAGTTGCAGACCCAAAACTGTGTGGAGCGTTTGATGATGAACAGATGAAAAGGTTAGTGGGTATAGGTCTTTGGTGTGCTCATCCAAATTACAGATTCAGGCCTTCTGCCATGCAAGTCATTCAAATGCTTAAATTTGAAGCTGAATTGCCAACTCTGCCAGAGTGGCTACCTGTTCATAATTTCTATCCTTCAACAGTAAAAGTAAATTTTTCATCGTCTTCAAACACTGTAACTGTCCAGGAAATTTTGTAG 1632 0.4191 MGNGGFSTLTLILCYAMATVSFLPSTNTLSCSYLKFWGNDAWLQLRGDAEVSASEIQVTSNREGKNNSYSVGRVTPELTMHLWDKSSGKLADFTTHFSFSVYSNEIQFGDGFAFFLADPGLPLLNNITEGGGLGLVDGDRVLNSTQHSFVAVEFDTFQNPWDPEDPHVGMNFNSMKSNVTASWLAIMSQDVVYNCSIEYNSTTFCLSASFTGYDYKKYGRIQNSLSYHVDLRKHLPERVMVGFSAAAGYYFEDHILKSWSFSSGLEIEIGDTSGDDNKAVEWVGIGIGLVVFLGLACFLMWRRIKGKEKVLEIDLKMDDEFQKGIGPKRFPYNELESATSKFSESEKLGQGGFGGVYKGFLKDLNSYVAIKRVSRESKQGGLVDHEKGSQTTLIAGTRGYIAPEYVTTGKAYKESDIYSFGVVLLEIASGRKAIDLKAQEGKVSIVEWVWEMYELGEILKVADPKLCGAFDDEQMKRLVGIGLWCAHPNYRFRPSAMQVIQMLKFEAELPTLPEWLPVHNFYPSTVKVNFSSSSNTVTVQEIL 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01919 543 SUPERFAMILY Protein kinase-like (PK-like) 327 532 IPR011009 -
Vian6g01919 543 CDD lectin_legume_LecRK_Arcelin_ConA 29 265 IPR001220 GO:0030246
Vian6g01919 543 Pfam Legume lectin domain 30 264 IPR001220 GO:0030246
Vian6g01919 543 PANTHER - 57 375 - -
Vian6g01919 543 SMART serkin_6 342 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01919 543 FunFam Lectin-domain containing receptor kinase A4.3 380 523 - -
Vian6g01919 543 Pfam Protein kinase domain 387 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01919 543 ProSitePatterns Protein kinases ATP-binding region signature. 348 371 IPR017441 GO:0005524
Vian6g01919 543 SUPERFAMILY Concanavalin A-like lectins/glucanases 32 267 IPR013320 -
Vian6g01919 543 ProSitePatterns Legume lectins alpha-chain signature. 235 244 IPR000985 -
Vian6g01919 543 ProSitePatterns Legume lectins beta-chain signature. 150 156 IPR019825 -
Vian6g01919 543 Gene3D Transferase(Phosphotransferase) domain 1 372 523 - -
Vian6g01919 543 Gene3D - 27 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01919 Vian-Chr6 36453325 36455279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01919 382 522 Receptor kinase-like Gene Family AT5G10530 50.685 2.28e-40 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vian6g01919 Lectin_legB 8.2e-57 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01919 - - gmx:100780181 366.311