Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01918 ATGGGGAGAGGGAAGATTGCGATTCGAAGGATCGACAACTCGACTAGCCGACAAGTGACTTTCTCAAAGAGAAGAAATGGATTGCTGAAGAAAGCTAGAGAATTATCAATTCTTTGTGATGCTGAAGTTGGATTGATGGTGTTTTCCAGCACTGGAAAGCTTTATGATTATGCAAGCACAAGCATGAAATCTGTTTTTGAGCGCTACAACAAGCTAAAAGAGGAGCATCATCACCTCATGAATCCGGCTTCAGAAGAAAAGTTTTGGCAGACAGAAGCAGCAAACTTGAGGACACAGCTTCAGTATTTGCAAGAATGCCACAGCAGGCAATTAATGGGTGAAGAACTTACGGGTTTGGGTATCAAAGAACTACAAAATCTGGAAAACCAACTGGAGATGAGTCTAAAGGGTGTTCGCATGAAAAAGGATCAAATTTTAACAAGTGAGATTAAAGAACTGCGCCAAAAGGGAAATCTCATTCATCAGGACAATGTTGAACTCTATCAAAAAATGGACCAGATTCAAAAGGAAAATGCAGAGCTACAGAAGAAGGTTTTCGGAAGCAGGAGTACAGGTGAAGAAAATGTGGCATCCAGTCCTTCTTACATGGTCAGAAATGAATATGAATTACGTCCACCAATCAGTCTCCAGCTAAGTCAGCCACAGACTCAATACAGTGAACCATCAGCCAAAGTAATGAAACTCGGATTGCAGCTGCATTAG 723 0.4136 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLMVFSSTGKLYDYASTSMKSVFERYNKLKEEHHHLMNPASEEKFWQTEAANLRTQLQYLQECHSRQLMGEELTGLGIKELQNLENQLEMSLKGVRMKKDQILTSEIKELRQKGNLIHQDNVELYQKMDQIQKENAELQKKVFGSRSTGEENVASSPSYMVRNEYELRPPISLQLSQPQTQYSEPSAKVMKLGLQLH 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01918 240 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Vian6g01918 240 Coils Coil 121 141 - -
Vian6g01918 240 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Vian6g01918 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vian6g01918 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian6g01918 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vian6g01918 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vian6g01918 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vian6g01918 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 182 - -
Vian6g01918 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vian6g01918 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vian6g01918 240 Coils Coil 164 184 - -
Vian6g01918 240 ProSiteProfiles K-box domain profile. 86 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian6g01918 240 Pfam K-box region 83 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian6g01918 240 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Vian6g01918 240 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01918 Vian-Chr6 36432511 36445760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01918 1 240 MADS-box Gene Family AT2G14210 60.166 5.41e-88 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vian6g01918 K-box 5.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01918 K09264 - gmx:100808145 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01918 6 36432511 36445760 Vian6g01918 6 36432511 36445760 ECH