Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01909 ATGGAGAATTATTCATACCAATCATACCCTGATTCCGGCGACTCCTCTCCACGCTCCAGAGAGATCGACTTTGACAACCCTCCTCCTCCATGGGACGAACAACAACAACAACAGCAGAATTACAAGGTAAAGTTCATGTGCAGCTACGGCGGCAAGATCCACCCACGCTCCCACGACAACCAACTGTCATACGTCGGCGGCGAGACTAAGATCCTCGCCGTGGACCGCTCCATAAAGTTTGGAGCCCTGCTGGCCAAGCTCTCGGCCCTCTGCGAGGTGGCGCCACCAGAAAGCAACGGCAGCAGCCTCACCTTCAAGTACCAGCTCCCTGGCGAAGACCTCGACGCTCTTATCTCTGTCACCAACGACGACGACCTCGACCACATGATGCACGAGTACGATCGCCTCTACCGCGCTTCCGCTAGACCCGCCCGCATGCGATTATTCCTCTTTCTCGCCGATAATCTTCCTTCTCCGCTTCCTGCTTCCGCACCGCTCCAACCTGTGATTAAACCAAATAACGTTGATTTCCTCTTCGGTCTCGAGAAGGGCGCCGGTGTCGCCGTCGCGGCTCAGCCGGCTCAGATTCCGCCTGCGGCGGTCAAATTTCATGATCCGGTGCCGGAGCCCGTCGCGCCACCGCCGGAGTACCAGTCTCGGCTGAATTTAAACCCTGTGGACAGGGTTTCGGCCTCGGATCCGAGCGCGATTCAGCGCCAGTTGCAGCAGTTGCAAATTGCGGAGAGCGAGCAAGGCGCGTACCGGAGGAAGAGCGAGGATAATTACCCTGCCGGTGATTATTACGTTCAGAAGCTGCCAGAGAAGTTCCCTCCGGCGAATTTACAGCAGAACGCCCAGGGATATTGGTCGGAAAAGCATGTTTCAGGCGAAGCATATCCACCGGCGGTGTCCGCTGCATCCGGTGGAGGAGATGCGCCGGTTTACATGATATCGGCGCCGGGGGCGTTCTATCATGCGCCGGTGGTGCGGCCTCCAGCCACCCAGGGGTACTACGCGGTGCAGCGAATGGCTTCAGATGGTTACCGTGAAGCGGCAGTGTTCGGCGGTGTCACGCAGGCAAAAACGGCGGCTCAAGCAAGCTTGGCGCCAGGGCAGCAACCGGTTAAGACTCCCGCGTATACGGAAGGATTCGGTATGATGCGGCCCAGTGGGATAATGGATAATACGGGTGCGCCGTACGCACAGGTAGCGTACGATAGTGCAGGTGGGAGACAGGTTTATTATACTGCACCGGGTGGCGTAGTGCACGCTCCTCCGTACCAAGGCGTTTTTCCACCGGTCACCTCTGATCTGAGGCAAACTGCGGTGACCTTGGGTCAAGATGTTAAAGTGTTGAACAAAGTTACTCAAGGTTCAGTGTGA 1383 0.5719 MENYSYQSYPDSGDSSPRSREIDFDNPPPPWDEQQQQQQNYKVKFMCSYGGKIHPRSHDNQLSYVGGETKILAVDRSIKFGALLAKLSALCEVAPPESNGSSLTFKYQLPGEDLDALISVTNDDDLDHMMHEYDRLYRASARPARMRLFLFLADNLPSPLPASAPLQPVIKPNNVDFLFGLEKGAGVAVAAQPAQIPPAAVKFHDPVPEPVAPPPEYQSRLNLNPVDRVSASDPSAIQRQLQQLQIAESEQGAYRRKSEDNYPAGDYYVQKLPEKFPPANLQQNAQGYWSEKHVSGEAYPPAVSAASGGGDAPVYMISAPGAFYHAPVVRPPATQGYYAVQRMASDGYREAAVFGGVTQAKTAAQASLAPGQQPVKTPAYTEGFGMMRPSGIMDNTGAPYAQVAYDSAGGRQVYYTAPGGVVHAPPYQGVFPPVTSDLRQTAVTLGQDVKVLNKVTQGSV 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01909 460 PANTHER OS05G0427100 PROTEIN-RELATED 9 336 - -
Vian6g01909 460 MobiDBLite consensus disorder prediction 1 15 - -
Vian6g01909 460 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 62 153 - -
Vian6g01909 460 Pfam PB1 domain 58 151 IPR000270 GO:0005515
Vian6g01909 460 MobiDBLite consensus disorder prediction 1 38 - -
Vian6g01909 460 Gene3D - 63 153 - -
Vian6g01909 460 SUPERFAMILY CAD & PB1 domains 58 155 - -
Vian6g01909 460 SMART PB1_new 57 153 IPR000270 GO:0005515
Vian6g01909 460 CDD PB1_UP2 46 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01909 Vian-Chr6 36323624 36325006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01909 41 151 MAP Kinase Kinase Kinase AT5G57610 46.847 3.87e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01909 - - var:108341806 868.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01909 6 36323624 36325006 Vian6g01909 6 36323624 36325006 ECH
Vian1g03065 1 51064555 51065973 Vian6g01909 6 36323624 36325006 PCT